Gene detail information of Glyur000451s00016527 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18760.1 | 1.00E-44 | Translation elongation factor EF1B/ribosomal protein S6 family protein |
| NR | XP_004494116.1 | 8.80E-72 | PREDICTED: 30S ribosomal protein S6-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072UDJ5|A0A072UDJ5_MEDTR | 8.00E-70 | Ribosomal protein S6 family protein {ECO:0000313|EMBL:KEH27188.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00451 | 98656 | 101114 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000451s00016527.1 | PF01250.12 | Ribosomal_S6 | 3 | 96 | 1.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.995 |
| SRR1783600 | control | 19.555 |
| SRR1783602 | moderate drought stress | 20.971 |
| SRR1811619 | moderate drought stress | 20.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.989 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.919 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.300 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.681 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.404 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.871 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.503 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 75.697 |
| SRR2868004 | Drought Stress (root) | 64.547 |
| SRR2967015 | Control (root) | 49.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.737 |
| SRR9715740 | Leaf | 50.792 |
| SRR9715741 | Leaf | 47.020 |
| SRR9715739 | Root | 4.685 |
| SRR9715742 | Root | 23.252 |
| SRR9715743 | Root | 18.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 96.374 |
| SRR8749028 | MeJA induced 9h | 41.778 |
| SRR8749029 | MeJA induced 9h | 76.081 |
| SRR8749030 | Uninduced | 22.076 |
| SRR8749031 | Uninduced | 9.443 |
| SRR8749032 | Uninduced | 13.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 48.878 |
| SRR8400027 | Control - Root | 41.399 |