Gene detail

Gene detail information of Glyur000451s00016525

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G19930.1	RNA-dependent RNA polymerase family protein
NR	XP_004513037.1	PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer arietinum]
Swissprot	tr\|O82188\|RDR5_ARATH	Probable RNA-dependent RNA polymerase 5
trEMBL	tr\|K7K152\|K7K152_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G01210.2}

Sequence

Transcript Sequence

>Glyur000451s00016525.1
ATGCTCAAACAGTCTCCACCGCAGCAACAAAACTCTTCTCTTTCTTCTCCCTCAAAACCCTCTCCTCTGCCACATTCCAATGCTGCTCTCTCTGCGTTGGGAGAATTGGAGTTCCGAAAAGCCTTTCTCTTACTGAGTTATGTTGGTCGACAGAGTCTTGAGAATGTGGTGACCGCTGAATATATCAGAAGCATCAAAGACTTGAATATGAAGAGTTTCGAGAGAGCAATTTGGGAAGCTGTCGGAAGTAAATATCTCGACCGTCCAAGTGATCGCCAACTGTATNTTGATTGGGATTCTGGCAGGACACATATATACCAGTGCCATGTTACTCCAGATGGGAGCTTAAGGTTCAAGGGCCCTATTTTAGATCACACGCGAACACACCTGCAAAAGTCTCTAGGTGATGATAATGTTTTGGTTGTTAAATTTGCGGAGGATAAGAGTGCAAGGAATTCAAAGACCAGTCCTCAAGAAGCTGTTGATCTCTATGGGAAGTTTGGAAGAGACGGGATCCGTGTTGGTCTTCGTCTGTATCGCTTTTTTGTTTTTAAAGTTAGCGGAAAGGAAGAGAAGAAGAAGGACCCAACAGCTTCCTCTGTAAAATGTTATTTTGTTAGGATGGAATCCTCTTGTTCTGCAGATGAGAGGGCATCTTACATTTTGTCAAATAAGACGATGTCTGAAGCTAGATCTTTATTCATGCATGCTCACACGTTACCCAGTATTGACAAGTATATGGCTAGGTTCTCTCTCATTCTGTCAAAGACGTTAAAACTCAATATTGACTTGGCAACTGTGAGTGTCCAAACAATACAAGATATACATTGCCAGGATGAAAATGGCAATATTGTGTATCATAATGAGAAAGCGCGTATTCTCACAGATGGAACTGGGTTCATCTCAGAAGATTTGGCAGTGCTCTGTCCTAACGACGTGTTAAAAGGAATGAACTTAAAGAATAAATCTATCAAGGAAATTTCCAATGTGGTTGAACTGGAGGATGTGAGTAAGGCTATTGGAGAAACAGTACCGAGCACACATCAGCCGCCTTTGCTGATTCAGTGCCGTCTCTTTCACATGGGTCATGCAATTAAGGGTACTCTTTTGGTTAACAGAAAGCTTCCTCCAAGGACAATAAAGGTTCGGCCTTCAATGATTAAAGTTGAGATAGACANGAACCTTCCAAATATTCAAAGCATAAATTCAATGGAGGTAGTAGCTACAAGCAACAAGCCAAATAGATCATATTTATCTAAATATTTGATTGCACTTCTAAGCTATGGAGGAGTGCCAAATGAATTCTTCATGGATGTACTTAAGAGTAATTTGGAAGATGCAGACCATGTCTACTCCAATAAGCGTGCTGCTCTTAGAGCTTCTGTCAACCATGGTGAGATGGATGAATACAATGCTGCAGGAATGATTTTATGTGGGATTCCTCTTGATGAACCTTTTTTGCGGAATCATCTGTCTGTACTTGCAAAAATGGAGAAGGAGAGACTTAAAGGAGGGAAGCTGTATTTACCTAATTGTTTCTATCTAATGGGGACTGTTGATCCCACTGGATGCTTGGAAGCGAATCAAGTTTGTATAATTCATGAAAATGGCCAAATTACCGGTGATGTGCTGGTTTATCGAAATCCAGGATTACATTTTGGGGACATTCACATACTGCAAGCCAGATATGTGGAGGGGTTAGAATCTTATGTTGGCAACAGCAAATATGCAATTTTTTTCCCATGTGTTGGACCTCGCTCCATAGCAGATGAGATAGCTGGAGGTGATTTTGATGGAGACATGTACTGGGTTTCAAAAAATCCTCAGTTGTTGCAATATTTCAGAAAGAGNGACCCTTGGATTGAAAGTCCTGCAGCTTGCAATGCTGTCAGATTGGGTTCTAGTGTTAAACAGCCTAGTGCACTTTCATCTGAGGAACTTGAGGAAGAACTTTTTAAACTATTCCTTGAAACTCGGTTTCAAGCAAGTAGCGCAATTGGGATGGCAGCCGATAGCTGGATGGCCCTCATGGACCGTCTTTTGACATTGAGAAATGACTGCACGAAAGAAAAGGAGAAACAACTTGTGCAGGAAAACATGGTTAAATTGATTAACATATACTACGAGGCATTAGATGCTCCTAAGAAAGGTGGAGGAAAGATCCAAGTTCCAAAAGATTTGGCCGTAGAAATGTTCCCGCACTACATGGAAAGGGACAGATCATTCACTTCTACCTCTATCTTAGGTTTAATATACGATGAGATTAGAAAACTCCCCTGTTTCGATGTTGAAGTACCTATGAGGTGCATGGAAAAGTGGGCAGCACTATATACGGAGTATAGGAAGGATATGACTAATGCCTTGAACGACCATTCTAAGGCCAAAGACGAGGCGGCAGAAGTCATCAAGAGTTATAAGCAGAAATTGTATGGAGCTGCTGACATGGAGGATAGTCCGAAGAACATTAGTGATATCTATAACGAGGCTTTGGCTGTGTATCACGTTACTTATGACTATGCCATTCTAACGAATGATGTCCGTAAATGTGGCTTTGCATGGAAGGTTGCTGGTTCAACTCTCACAAGTCTTTATGCAATAAAACAAAATCCAAAGGCATTAGCCTGTGCCCCATCTGCGGTTAGAGAGTTGTCGTTACGGTTAGTTATGGCGGAGCAACCGGCGGTGAGTCTACCGGAGTCGGTGGAGATTCTGATAATGAGAATCTGCGAGGAGCAGAAGCAATCTCCACCTGATTTCACGGCGAGGCGACGGCTGGCCGCAATCGGAGAGCAACAAGCACTCGAGATTCTCTTCAAAATCTCCAAATCCAAAAAAATCAATTCTCTCACGAAATTCATCATGTACATGCTCAAACAGACACCATCGCAACAGTACTACTCTCTTTCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTCCCTCAAAACCTTCTCCTCTGCCACGTTCCAATGCTGCTCTCTCTGTGTTGGGAGAATTGGAGTTTCGAAAGGCTTTTTTGCTGTTGAGTTATGTAGGACGGGAGAGTATTGAGAATGTGGTGACAGCTGAATATATTAGAAGCATCAAAGACTTGCCAATGAAAAGCTTCGAGGAAGAAATATGGGAAGCTGTGGGGAATAAATACATCGATGACGAAAGTGATTGGCGCCAACTGGGCCCTATTTTACAACACACGCGAACACACCTGCAAAATTCTCTAGGTGATGACAATGTTTTGGTTGTTAAATTCACTGAGGAATATGAGAGTGCAAGGAATTCAAAGACCAGTGCTCAAAAAGCTGTTGATCTCTATGGGAAGTTTGGAAAAGAAGGGATCCGTGTTGGTCTTCGTTTGTTCTCTCTCATTCTGTCAAAGACATTCAAACTCAATATTGACTTGGCAACTGTGAGTGTCCAAACAATACAAGATATACATTGCCAGGATGAAAATGACAATATTGTGTATCAAAATGAGAAGCCGCGTATTCTCACAGACGGAACTGGGTTCATCTCAGAAGATTTGGCGGTGCTTTACCATGACGACATGTCAAAAGGAAAGAACTTAAAGAATGAATATATTCAGTGTCGTCTATTTCACATGGGTCGTGCAATTAAGGGTACTCTCTTGGTTAACAGAAAGCTTCCTCCAAGGACAATACAGGTTCGGCCTTCAATGATTAAAGTTGAGACAGACTTGAGCCTTCCAAATATTAACAGCATAAATTCATTGGAGCAAACTGATATGAAGCCTACATGTTTCAGCAACAAGCCACATAGAACATATTTATCTAAATATTTGATTGCACTTCTAAGCTATGGAGGAGTCCCAAATAAATTCTTCATGGATGTACTTAAGAGTAATTTGGAATATGCAGACCATGTCTACTTCAATAAGCGTTTTGCACTCAGAGCTTCTGTCAATCATGGTGAGATGGATGAATACAATGCTGCAGGAATGATATTATGTGGGATTCCTCTTGATGAGCCATTTTTGCGGTATCGTCTGTCTAAACTTGCAACAGAGGAAAAGAAGAGGCTTAAAAGAGGGAAGCTATATTTACCAGATTGTTTCTATCTAATGGGGACTGTTGATCCCACTAAATCCCTGGAAGCGAATCAAGTTTGTATAATTCATGAAAATGGCCACATTACTGGGGATGTGCTGGTTTATCGAAATCCTGGTTTACATTTTGGGGACATTCACATAATGCATGCTAGATATGTGGAGGGGTTAGAATCTTATGTTGGCAGTAGCAAATATGCAATCTTTTTCCCATGTGTTGGACCTCGCTCTATGGCAGATGAGATAGCTGGAGGTGATTTTGATGGAGACATGTATTGGGTTTCAAAAAATCCCCAGTTGTTGCAATATTTCAGAAAAAGCGATCCTTGGATGGAAAGTCCTGCACCTTTCAATTCTGTCAGATTGGATTCTAGTGTTAAGAATCCCCGTGCACTTTCAACTGAGGAACTCGAGGAAGAACTTTTTAAACTATTCCTNGAAAATCGGTTCCAATCAAGTTTTGCAATAGGCATGGCAGCCGATAGCTGGATGACACACATGGACCGTCTTTTAACATTAAGAAATCACCACACTGAAGAAAAAGAGAAGCAACGAGTGCAGGAAAATATACTTAAATTGATTAATATATACTACGAGGCATTAGATGCACCTAAGAAAGGTGGAGGAAAGGTCCAAGTTCCAAATGATTTGGCTGTAGAAATGTTCCCGCACTACATGGAAAGGGACAGATNATTCACTTCAACCTCTATCTTAGGTTTAATATACGATGAGGTTATTAGATGTCAAACTAATGATGACATGTCTGCGAAAGAAATCAGAAAACTCCCCTGTTTTGATGTTGAGATACCTATAAGCTGCATGGAAAAGTGGGAAGCACTATATAAGGAGTACAGGAAGGATATGANTACCGCCTTAAATGATCATTCTAATGCCAATGAGAAGGCGGCTGAAGTCAATCAGATTTATAAGCAGGATAGTCCAAAGAGCATTAGTGGTATTTATAACGAGGCTTTGGCTGTGTATCACATTACTTATGACTATGCCATTCAAATGAATTCAGTCGAGAAATGTGGCTTTGCATGGAAGGTTGCTGGTTCAGCTCTCACAAGTCTTTATGCAATAAATCAAAATCCAAAGGCATTGACCTGTACCCCATCT

Protein Sequence

>Glyur000451s00016525.1
MLKQSPPQQQNSSLSSPSKPSPLPHSNAALSALGELEFRKAFLLLSYVGRQSLENVVTAEYIRSIKDLNMKSFERAIWEAVGSKYLDRPSDRQLYXDWDSGRTHIYQCHVTPDGSLRFKGPILDHTRTHLQKSLGDDNVLVVKFAEDKSARNSKTSPQEAVDLYGKFGRDGIRVGLRLYRFFVFKVSGKEEKKKDPTASSVKCYFVRMESSCSADERASYILSNKTMSEARSLFMHAHTLPSIDKYMARFSLILSKTLKLNIDLATVSVQTIQDIHCQDENGNIVYHNEKARILTDGTGFISEDLAVLCPNDVLKGMNLKNKSIKEISNVVELEDVSKAIGETVPSTHQPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIKVRPSMIKVEIDXNLPNIQSINSMEVVATSNKPNRSYLSKYLIALLSYGGVPNEFFMDVLKSNLEDADHVYSNKRAALRASVNHGEMDEYNAAGMILCGIPLDEPFLRNHLSVLAKMEKERLKGGKLYLPNCFYLMGTVDPTGCLEANQVCIIHENGQITGDVLVYRNPGLHFGDIHILQARYVEGLESYVGNSKYAIFFPCVGPRSIADEIAGGDFDGDMYWVSKNPQLLQYFRKXDPWIESPAACNAVRLGSSVKQPSALSSEELEEELFKLFLETRFQASSAIGMAADSWMALMDRLLTLRNDCTKEKEKQLVQENMVKLINIYYEALDAPKKGGGKIQVPKDLAVEMFPHYMERDRSFTSTSILGLIYDEIRKLPCFDVEVPMRCMEKWAALYTEYRKDMTNALNDHSKAKDEAAEVIKSYKQKLYGAADMEDSPKNISDIYNEALAVYHVTYDYAILTNDVRKCGFAWKVAGSTLTSLYAIKQNPKALACAPSAVRELSLRLVMAEQPAVSLPESVEILIMRICEEQKQSPPDFTARRRLAAIGEQQALEILFKISKSKKINSLTKFIMYMLKQTPSQQYYSLSPPPPPSSSSSPSKPSPLPRSNAALSVLGELEFRKAFLLLSYVGRESIENVVTAEYIRSIKDLPMKSFEEEIWEAVGNKYIDDESDWRQLGPILQHTRTHLQNSLGDDNVLVVKFTEEYESARNSKTSAQKAVDLYGKFGKEGIRVGLRLFSLILSKTFKLNIDLATVSVQTIQDIHCQDENDNIVYQNEKPRILTDGTGFISEDLAVLYHDDMSKGKNLKNEYIQCRLFHMGRAIKGTLLVNRKLPPRTIQVRPSMIKVETDLSLPNINSINSLEQTDMKPTCFSNKPHRTYLSKYLIALLSYGGVPNKFFMDVLKSNLEYADHVYFNKRFALRASVNHGEMDEYNAAGMILCGIPLDEPFLRYRLSKLATEEKKRLKRGKLYLPDCFYLMGTVDPTKSLEANQVCIIHENGHITGDVLVYRNPGLHFGDIHIMHARYVEGLESYVGSSKYAIFFPCVGPRSMADEIAGGDFDGDMYWVSKNPQLLQYFRKSDPWMESPAPFNSVRLDSSVKNPRALSTEELEEELFKLFLENRFQSSFAIGMAADSWMTHMDRLLTLRNHHTEEKEKQRVQENILKLINIYYEALDAPKKGGGKVQVPNDLAVEMFPHYMERDRXFTSTSILGLIYDEVIRCQTNDDMSAKEIRKLPCFDVEIPISCMEKWEALYKEYRKDMXTALNDHSNANEKAAEVNQIYKQDSPKSISGIYNEALAVYHITYDYAIQMNSVEKCGFAWKVAGSALTSLYAINQNPKALTCTPS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00451	70826	94437	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003968 RNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000451s00016525.1	PF05183.7	RdRP	116	757	4.10E-103
Glyur000451s00016525.1	PF05183.7	RdRP	1092	1606	1.80E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.975
SRR1783600	control	7.116
SRR1783602	moderate drought stress	7.149
SRR1811619	moderate drought stress	6.903

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.167
DRR006520	Root Summer glycyrrhizin high producing strain	9.305
DRR006521	Root Winter glycyrrhizin high producing strain	4.185
DRR006522	Root Winter glycyrrhizin high producing strain	4.113
DRR006523	Root Summer glycyrrhizin low producing strain	13.073
DRR006524	Root Summer glycyrrhizin low producing strain	13.187
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.880
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.975
SRR2868004	Drought Stress (root)	2.889
SRR2967015	Control (root)	2.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.929
SRR9715740	Leaf	2.737
SRR9715741	Leaf	0.643
SRR9715739	Root	0.909
SRR9715742	Root	9.961
SRR9715743	Root	8.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.725
SRR8749028	MeJA induced 9h	3.976
SRR8749029	MeJA induced 9h	2.993
SRR8749030	Uninduced	3.632
SRR8749031	Uninduced	1.042
SRR8749032	Uninduced	0.726

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.696
SRR8400027	Control - Root	4.508