Gene detail

Gene detail information of Glyur000451s00016524

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46500.1	9.00E-65	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004513040.1	1.69E-106	PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform X2 [Cicer arietinum]
COG	NP_248837.1	1.00E-39	oxidoreductase [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|O49561\|G2OX8_ARATH	1.00E-18	Gibberellin 2-beta-dioxygenase 8
trEMBL	tr\|I1MM10\|I1MM10_SOYBN	4.00E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G08470.2}

Sequence

Transcript Sequence

>Glyur000451s00016524.1
GCAAAAGTGCAAAGTGGTTTCGAAAAAAAGAGGTCCTCATTCATTCTTTTTCTTCTTTCATTCCAACATGGGAAAACAAAAAAAACAAACACAACTCTCTCACCCCACCAAATTCTCTGCCCTCAACTGCATCGAAAAAAACAACCCTGACATCAACCAATCCGTGAATTTGCTCAAACAGGCATGTAAAAAAACTGGTTTTTTCTATGTTGTCAACCATGGAATCAGCCAGGAATTCATGGAAAAAAAATTTACACAGAGCAAGAGGTTTTTCACCCTTCCCCTGAAGGAAAAGATGAAAAAAAAAAGGAATGAAAAACACAGGGGATATACCCCTGTTCTTGATGAGCTACTTGATCCTGAAAACCAAGTACATGGAAAAAAAAAAGAGGGGTATTATATTGGAGTTGAAGTAGCTGAAGATGACCCAGAATAAAAAAAACCTTTTTATGGGCCAAATAAATGGCCTGCACCAGAGAAGTGGGGAAAGCAGTTGGAAAGATAATAGCCCTTGCACTTGGTCTGGATGCTAATTTTTTTGATCAGCCACAAATGCTGGGAGAGTCGATTGCAACTCTACGTTTGTTGCACTATGAAGGTCAAACATCGGATCCCTCGAAAGGATTATATGGAGCTGGAGCTCATAAAAAAAATGGTTTAATTACACTTTTGGCAACAGATGATGTCTCGGGTCTTCAAATATGCAAGGATAGGGATGCTAAACCTCTGATAAAAAAAGATGTGCCACCATTGAAGGGAGCATTCATAGTGAATCTTGGTGACATGTTGGAGCGCTGGAGCAATGGAAAAAAAAAGTCCACACTGCATAGAGTTCTAGGAAATGGTCAAGAGAGATATTCTATTGCTTACTTTTTGGAGCCTAGTCATGATTGTCTAGTGGAGTGCTTGCCAACCTGCAAATCAGATAGTAATCCTCCCAAATTTCCTCCTATCTTATGCCGGGACTACCTGAGCCAGCGCTACGATGATACTCATGCAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00451	65034	69533	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000451s00016524.1	PF03171.15	2OG-FeII_Oxy	39	140	2.30E-19
Glyur000451s00016524.2	PF03171.15	2OG-FeII_Oxy	39	140	2.30E-19
Glyur000451s00016524.3	PF14226.1	DIOX_N	25	121	6.00E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.855
SRR1783600	control	1.731
SRR1783602	moderate drought stress	1.628
SRR1811619	moderate drought stress	1.738

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.437
DRR006520	Root Summer glycyrrhizin high producing strain	1.396
DRR006521	Root Winter glycyrrhizin high producing strain	19.048
DRR006522	Root Winter glycyrrhizin high producing strain	16.346
DRR006523	Root Summer glycyrrhizin low producing strain	5.138
DRR006524	Root Summer glycyrrhizin low producing strain	3.939
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.211
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.348

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.136
SRR2868004	Drought Stress (root)	15.969
SRR2967015	Control (root)	7.385

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.060
SRR9715740	Leaf	14.775
SRR9715741	Leaf	36.463
SRR9715739	Root	8.272
SRR9715742	Root	7.706
SRR9715743	Root	10.520

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.086
SRR8749028	MeJA induced 9h	21.865
SRR8749029	MeJA induced 9h	26.687
SRR8749030	Uninduced	67.147
SRR8749031	Uninduced	35.077
SRR8749032	Uninduced	59.564

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.616
SRR8400027	Control - Root	5.740