Gene detail

Gene detail information of Glyur000451s00016515.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69770.1	0	chromomethylase 3
NR	XP_004513047.1	0	PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum]
COG	YP_003526742.1	9.00E-52	NUDIX hydrolase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q94F88\|CMT3_ARATH	0	DNA (cytosine-5)-methyltransferase CMT3
trEMBL	tr\|K7K149\|K7K149_SOYBN	0	Cytosine-specific methyltransferase {ECO:0000256\|RuleBase:RU000417}

Sequence

Transcript Sequence

>Glyur000451s00016515.2
AAACAGTCCTTGAATTTCGCCTTCCCGCCCAACCCACCTTTCTTCGAAATAAATCTCAGCGCCTCCTATAAATACCCATTCTCTCCATTTCGCACCCTCTCGCCCCTTTCTCATTTTTCAAAATCTCTCTACCTACNTACAATTATTGACTTATCCTCCTCCACTACCATGCCGAGCAAGCGCAAATCCACGTCATCCTCAGTCGCCGTAACCGTCGCCGCCGATTCAACTTCCGGCGAGTCTCCGAACAAGTCAAGGAGAAAGGCGAATCTGATCCGTCCGGAAGCTGTAGCAGCTTCCTCACCTGCCGTCGAAGTAGAAAAGAACGAAGCTAGCAACGCCGACGCTGCTACTTCAACTGTCGACGGCACTGGAAGTGACGATGAAGGAAGTAACTCCAGATTCGTCGGAGATCCAGTTCCTGAAGAGGAAGCGAGGCGGCGCTGGCCTAAACGGTACCAAGAGAAGAAAAAGAAGCAATCCACTGGGTCAAAGTCAAACAGTGACGAGGATATTCTTCAAGCTCGACGTCACTACACACAGGCAGAAGTAGATGGGTGCACGCTTTACAAACTTTATGATGATGCCCATGTGAAAGCGGAGGAAGGAGAGGACAATTATATTTGTAAAATTGTTGAGATGTTTGAGGCAGTAGATGGGACATTGCATTTCACGGCACAATGGTATTATAGAGCAAAGGACACCGTCATTAAAAACCATGCNTATCTTATTGAACCAAAGCGAGTTTTCTTTTCAGAAGTCCAGGATGACAACCCACTGGACTGTCTTGTTGAAAAGTTAATTATTGCCAGAATACCACTAAATGGAGATATGGATGCAATGAAGGAAACAATTCCACCTTGTGATTATTACTGTGATACACTATATCTTTTGCCGTACTCTACATTTGTNAAATTACCATCAGAAAGCAGGGAAACCGGTAGCGAGACGTCATCAACAATATCTTCCGAAATTGATGTAAATGGAAGATCTGAGGTGGACTCTCAACTCAAGAATGCTTTTCATCGGGAAGAAAATAAAGAACCTGAGCTGAAGTTACTGGATTTATATTCTGGTTGTGGAGCAATGTCAACTGGTTTATGCCTCGGTGGGGTTTTGTCTGGTTCGAACATTGTTACAAGATGGGCAGTAGACTTGAACGAACATGCTTGTCAAAGTCTTAAATTAAACCATCCTGAAACAGAGGTTAGAAATGAATCAGCTGAAAATTTTCTATCATTATTGAAAGAATGGGAGAAGTTATGTAGTTACTTCTCTTTAGTCCAAAACAAGGTGCCACATAAGCAGTATGTGGATCTTTTTAGTGCAGAAGAGGACGATGACAGTGGCAGTGGCAGTGGCAGTGGCAGTGAAGAGAATAATGATGAAGGGGGCGAAGAAGTGTTTGAAGTTTCAGAATTGCTTGCTGTACGCTATTGTGATCCGAATCGGAAAAGTGAAAAAGGGTTGTGCTTTAAGACGAACAGATCTGAGGCGACGAGGAAAGGGAAAGCTGGAGGTCTGCACGAACTGGAAAAAGCCGCTCACGGTGGGGGACGACATGCACGCGCTGTGACGGCGACTGGCGAGCTGCGTAATTGCAAGGAAAGAATAAAGGATTTTNTCATTCGAGGCTTCAAGTCAAACATCTTACCATTGCCGGGAGTTGTTGATGTAATATGTGGTGGACCTCCTTGCCAAGGAATTAGTGGTTTCAACCGTTTTCGGAACAAAGAGAACCCTTTGGAAGATGAGAAGAACAAACAACTAGTGGTTTTCATGGATATTGTTCATTACCTTCGGCCCAAATTTGCATTGATGGAAAATGTGGTTGATATTGTAAAATTTGCAAATGGCTATCTTGGTAGATATGCATTGGGTCGCCTCCTTCAAATGAATTATCAAAGTCGCATCGGAATTATGGCTGCTGGAGCTTATGGACTTCCCCAGTTTCGCCTTCGTATCTTCATATGGGGGGCCGCACCTTCGGAGAAGCTGCCTCAATTTCCGCTTCCAACTCATGATGTTATAGTAAGAGGTGTTATTCCTTTGGAGTTTGAGAAAAACACAGTTGCGTATGATGAAGGACACAATGTAGAGCTGCAAAGAATACTTTTATTGGAAGATGCTATTTCTGACCTTCCTCCGATTGAGAATAATGAAAGTCGAGATGACATGCAATATGACAAACCTCCCGAGACAGAGTTCCAGAAATTTATTAGATCAAGCAAAAGTGAAATGTTGGGTATTTCAACTAGGAAAAAATCGTCAGAGTCTCTGCTTCATGATCATCGTCCACTGGAATTGAATACGGATGATTATCAACGTGTGTGTCGGATCCCTAAAAAGAAGGGTGGATGCTTCAGAGATTTACCTGGTGTTCGTGTGCGACCTGATAATAAAGTCGAATGGGATCCTGATGTAAAACGTGTATATTTGGATTCGGGAAAACCATTGGTTCCAGATTATGCCATGTCTTTTGTGAATGGAACATCATCAAAGCCTTTTGCTCGGTTATGGTGGGATGAAACAGTTCCAACGGTCGCAATTTTACATCCAGAGCAGGATAGAGTGTTGTCGATTCGTGAAAATGCAAGACTTCAGGGTTTTCCCGACTTCTATAAGCTATGTGGGCCAGTCAAAGAAAGACAAAAGAGAAAAAATTGTGTGCGCTTAGAAAAAGACATGGCGAGAGTGATGATGGGAATGTCATGCTGCCTATGCAAGTTTGCTAATGCTACCTTGTCACGACCCTTCTCTTCACTCTCTCACCCTTTTTCCTCCTCCACCTTCTCACCACCACCAACCCCTTCTTCCATCAACCACAACCTACCCTCATTTTCTGCTTCTGCGTCATCCNCATTGACATGGGACGATGTATTTCGTATTTCTGAATCTGAAGCTGCCACCAAAGAGGACCCTTCTTGTTATCTCCAAGGCTACTTCCACAAAGTCCAACTATGCAATCGTGGTTCTGACAAACAATCTGAATTCCTTCCATTTGTCGTTGAGGGCCACATTGTTGGATTCATTCACAATGGGTTTGTGGAGCATTTGAGAGGCTTTAGTGATGTATTCGTTTTCCCCAAAGATGGAGGCCCCTTTGGTGACTGTGTTTCATTGCATCCATTGCTGAAGACAGCTGAGGAAAGAACCAGTGCGGTTGGATNTGTAGTAGAGCATTTGGGAGAGGAGCATATTCCTGGTTTTCGGAATGAGGCTTATGGAGTCCATATGAATGGCTATGTTGAGCTGGATGGGCAGAAGCACCTATGGGTAGGGAAGAGAAGTCACACGAAGTCCACATATCCCGGAATGCTTGATCAGCTAGTTGCAGGAGGACTGCCGCCCGGAATTGATTGTCAGGAAAATGTTGTAAAGGAATGTGAAGAGGAAGCAGGAATACCTAGGTCCATCTCTATTAAAGCCATACCTGTTGGTGCTGTTTCATATATGGACATTGAAGGGTATAGATACAAGAGAGAGGTTCTATTCTGCTATGANTTGANACTTCCAGAAAGTTTTGTACCAAGAAATGAAGATGGAGAAGTTGAAAGCTTCAAGTTGATCCCTATTATGAAAGTTGCAGAAGTTGTACGCAGGACGCAATTTTTCAAACCGAATTGCGCCGTTGTGATCATTGACTTCCTATACATAAGTCCTGAACATCATGGATATCTTGATCTCTTACGAAGTTTAAGAGTAGGAGAATGCTCCTGANTCAGAAACCATTATGACTATTCAAT

Protein Sequence

>Glyur000451s00016515.2
KQSLNFAFPPNPPFFEINLSASYKYPFSPFRTLSPLSHFSKSLYLXTIIDLSSSTTMPSKRKSTSSSVAVTVAADSTSGESPNKSRRKANLIRPEAVAASSPAVEVEKNEASNADAATSTVDGTGSDDEGSNSRFVGDPVPEEEARRRWPKRYQEKKKKQSTGSKSNSDEDILQARRHYTQAEVDGCTLYKLYDDAHVKAEEGEDNYICKIVEMFEAVDGTLHFTAQWYYRAKDTVIKNHAYLIEPKRVFFSEVQDDNPLDCLVEKLIIARIPLNGDMDAMKETIPPCDYYCDTLYLLPYSTFVKLPSESRETGSETSSTISSEIDVNGRSEVDSQLKNAFHREENKEPELKLLDLYSGCGAMSTGLCLGGVLSGSNIVTRWAVDLNEHACQSLKLNHPETEVRNESAENFLSLLKEWEKLCSYFSLVQNKVPHKQYVDLFSAEEDDDSGSGSGSGSEENNDEGGEEVFEVSELLAVRYCDPNRKSEKGLCFKTNRSEATRKGKAGGLHELEKAAHGGGRHARAVTATGELRNCKERIKDFXIRGFKSNILPLPGVVDVICGGPPCQGISGFNRFRNKENPLEDEKNKQLVVFMDIVHYLRPKFALMENVVDIVKFANGYLGRYALGRLLQMNYQSRIGIMAAGAYGLPQFRLRIFIWGAAPSEKLPQFPLPTHDVIVRGVIPLEFEKNTVAYDEGHNVELQRILLLEDAISDLPPIENNESRDDMQYDKPPETEFQKFIRSSKSEMLGISTRKKSSESLLHDHRPLELNTDDYQRVCRIPKKKGGCFRDLPGVRVRPDNKVEWDPDVKRVYLDSGKPLVPDYAMSFVNGTSSKPFARLWWDETVPTVAILHPEQDRVLSIRENARLQGFPDFYKLCGPVKERQKRKNCVRLEKDMARVMMGMSCCLCKFANATLSRPFSSLSHPFSSSTFSPPPTPSSINHNLPSFSASASSXLTWDDVFRISESEAATKEDPSCYLQGYFHKVQLCNRGSDKQSEFLPFVVEGHIVGFIHNGFVEHLRGFSDVFVFPKDGGPFGDCVSLHPLLKTAEERTSAVGXVVEHLGEEHIPGFRNEAYGVHMNGYVELDGQKHLWVGKRSHTKSTYPGMLDQLVAGGLPPGIDCQENVVKECEEEAGIPRSISIKAIPVGAVSYMDIEGYRYKREVLFCYXLXLPESFVPRNEDGEVESFKLIPIMKVAEVVRRTQFFKPNCAVVIIDFLYISPEHHGYLDLLRSLRVGECS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00451	6871	24993	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00558	DNMT1, dcm	EC:2.1.1.37	Cysteine and methionine metabolism	map00270
			Cysteine and methionine metabolism	map00270
			MicroRNAs in cancer	map05206
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process
GO:0006306 DNA methylation

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0008168 methyltransferase activity

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000451s00016515.2	PF00145.12	DNA_methylase	549	881	1.10E-25
Glyur000451s00016515.2	PF00293.23	NUDIX	1086	1195	1.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.067
SRR1783600	control	5.089
SRR1783602	moderate drought stress	2.286
SRR1811619	moderate drought stress	2.504

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.612
DRR006520	Root Summer glycyrrhizin high producing strain	6.625
DRR006521	Root Winter glycyrrhizin high producing strain	5.396
DRR006522	Root Winter glycyrrhizin high producing strain	5.052
DRR006523	Root Summer glycyrrhizin low producing strain	3.499
DRR006524	Root Summer glycyrrhizin low producing strain	3.433
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.026
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.987

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.420
SRR2868004	Drought Stress (root)	11.181
SRR2967015	Control (root)	12.515

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.876
SRR9715740	Leaf	1.449
SRR9715741	Leaf	1.356
SRR9715739	Root	2.002
SRR9715742	Root	2.792
SRR9715743	Root	2.469

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.556
SRR8749028	MeJA induced 9h	18.236
SRR8749029	MeJA induced 9h	12.317
SRR8749030	Uninduced	4.053
SRR8749031	Uninduced	6.124
SRR8749032	Uninduced	4.341

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.424
SRR8400027	Control - Root	14.569