Gene detail

Gene detail information of Glyur000450s00024061.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03050.1	0	cellulose synthase-like D3
NR	XP_007158244.1	0	hypothetical protein PHAVU_002G136300g [Phaseolus vulgaris]
COG	YP_001519152.1	6.00E-17	cellulose synthase catalytic subunit [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9M9M4\|CSLD3_ARATH	0	Cellulose synthase-like protein D3
trEMBL	tr\|V7CLM5\|V7CLM5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30238.1}

Sequence

Transcript Sequence

>Glyur000450s00024061.1
TGAAATTACAGGTCTTGTAATCTGACTCATCATCATCACCATGGCTTCTAAATCGCATTTCAAACATGGGTCTTCTATGGTTAGGAAGATCATCCATCTTAGCAATGATATGGATCAGGATCAGGAAGATCAAAGGGAGAATGGGAATGGGAGTGTTGGTCGTGCTACCTACACAGTACACATTCCTCCAACACCAGATAACCAGCCAATGGAGATTTCTNTGGAGAGGTCCACTTCAAGGAGAGTGGAGGACCAATACGCTTCAAGCTCCATGTTCACTGGTGGTTTCAATCAGGTCACACGAGCCCATTTGAAGGANAAGGTGATCGAATCCGAATCCAGCCATCCCCAGATGGCTGGGACTAAAGGGTCCTCCTGTGCTGTTCCAGGCTGTGATGTAAAGGTCATGACTGATGAGAGAGGGTTGGATATACTTCCCTGTGAGTGTGATTACAAGATTTGTAGGGATTGTTATAGAGATGTTTTGCGCGTTGGTGAGGGGATTTGTCCNGGGTGTAAAGAGCCTTACAAGGAGGAGCAGGAGATGCAAGAGGATCCTTCTACTACTGTGGTCAACAATCAACAGGCACTGCNCTTGCCACCTNGTGCTGGTGCTGCTGGTTCAAAGATGGAGAGGAGGTTGTCCTTGATGAAATCGGGGACTTTGGGGAGGAGCCAAGCTAATGACTTCGATCACGCTCAGTGGTTGTTTGAGACCAAAGGGAGCTATGGATATGGAAATGCTATGTGGCCAAAAGATTCTGAAAATGATGCCAGTTCTGGTTCTGGTTCTGATTGGATGGCTGGTGACCCTAATGTATTCCATGAAAAGCCATGGAGGCCTTTGACCAGGAAATTGAGTATTTCCGCTGCAATTCTGAGTCCATATCGGCTCATAATATTAATTCGGCTGGTGGTTCTTGTTTTCTTCCTAGTGTGGAGGGTCGAAAACCCCAATGATGATGCACCCTGGTTGTGGGGCATGTCTGTGGTTTGTGAAATCTGGTTTGCCTTCTCCTGGTTGCTTGACCAGCTTCCTAAGTTCTTTCCCATAAACCGTTTTTCTGATCTGGACGTTTTGAAAGAGAAGTTTGAAACTCCTAGTCCCACAAATCCTTCTGGCAAGTCTGATCTTCCAGGAATAGACATGTTTGTGTCAACTGCAGATCCTGAGAAAGAACCACCACTTGTTACTGCAAACACTATTCTTTCTATTCTAGCTGCTGATTATCCTGTTGAGAAACTTTCATGTTATGTCTCTGATGANGGTGGTTCACTTCTGACTTTTGAGGCCATGGCAGAGGCTGCGAGTTTTGCCAATTTGTGGGTTCCTTTTTGCCGGAAGCATGGCATTGAGCCCAGGAACCCGGAATCTTATTTCAGTCTGAAGAGAGATCCCTACAAGAACAAAGTGCGCTCTGACTTTGTAAGGGACCGCAGGCGGGTAAAGCGTGAGTATGATGAGTTCAAGGTTCGGATTAATGGCCTTCCTGATTCCATCCGGAGGCGTTCTGATGCTTACAATGCTAGAGAGGAGATCAAAGCTATGAAGCTGAGGAGAGAGAATGGAAATGATGAACCAATGGAGAACTTGAAAATTCTTAAAGCTACATGGATGGCTGATGGAACCCACTGGCCTGGCACTTGGACAANTTCAGCACCAGAGCATTCGCGGGGTGATCATGCCAGTATCATACAGGTGATGTTAAAACCCCCAAGTGATGAACCACTGACTGACACAGCATCAGATTCAAATTCCATGGATTTAACTGAAGTTGATATTCGCCTTCCAATGCTTGTCTACGTTTCTCGTGAAAAACGACCTGGCTATGATCACAACAAGAAAGCCGGGGCCATGAATGCCCTGGTTCGAGCCTCGGCCATTATGTCCAATGGCCCTTTCATACTTAATCTTGATTGTGACCATTACATATTTAACTCCCAGGCTTTGAGGGAAGGCATGTGCTTCATGATGGACCGCGGCGGGGACAAGATCTGCTATGTCCAATTTCCTCAAAGGTTTGAAGGAATTGACCCTTCTGATCGCTATGCTAATCACAACACTGTCTTCTTTGATGTCAATATGCGAGCTCTCGATGGGATTCAGGGTCCCGTATATGTTGGCACCGGATGCCTATTTCGAAGAACTGCACTGTATGGCTTTGATCCACCCCGGGAGAAAGAAGAGGCTGGTCGTAAGAATAAGAAATCCTCAACAGTTGCGTCTGTCTCTGAAGCTGCTTCCGGTGAGGACCAGTCATTGAGGAGTGGTGGCAGCATTGATGATGAAGAAATGAGCACTGCTCTTATTCCTAAGAAATTTGGCAACTCAAGTCTTCTTGTTGATTCAGTCAGGGTGGCAGAGTTCCAAGGGAGACCCCTTGCTGATCACTCATCCATAAAAAATGGACGTCCACCGGGTGCTCTAACCCTTCCCCGGGATCTTCTTGATGCTGCTACTGTGGCGGAGGCCATCAATGTCATCTCTTGCTGGTATGAGGATAAGACTGAATGGGGCCTTAGAGTTGGGTGGATTTATGGGTCTGTAACTGAGGATGTTGTGACAGGCTATAGAATGCACAATAGGGGATGGAGGTCTGTGTATTGTGTGACCAAGAGGGATGCCTTCCGCGGGACCGCTCCAATCAATCTCACTGATCGGCTGCACCAAGTTCTCCGATGGGCAACTGGATCGGTTGAGATATTCTTCTCGCGCAACAATGCTCTCTTGGCTAGCTCTAGATTGAAATTCCTGCAGAGGATTGCTTACCTCAATGTTGGGATTTATCCATTCACTTCGATCTTCCTCATTGTTTACTGCTTCCTTCCTGCTCTATCCCTTTTCACTGGTGAGTTCATTGTCCAATCCCTCCAAGTCACTTTCCTAGTTTACCTCTTGGGGATCACAGTGACCCTTGTTCTTCTTGCTGTTCTGGAGATCAAGTGGTCTGGTATTGAACTCGAAGAGTGGTGGAGGAATGAGCAATTCTGGTTGATTGGAGGCACAAGTGCCCATTTTGCGGCCGTGATTCAGGGTCTACTAAAGGTGATGGCTGGCATTGAGATTTCATTCAACCTTACGTCAAAATCTTCTGGTGATGACGAGAANGACGAGTACGCCGATCTCTATGTCATCAAGTGGAGCTCTCTCATGATACCGCCACTCACAATCATGATGGTCAATTTGATAGCGATCGCGGTCGCGGTTACCAGGACTATATACAGCGAGGATCGTGAATGGAGCAGTTTGCTTGGAGGTGTGTTCTTCAGCTTTTGGGTCTTGGCTCATCTATATCCCTTTGCAAAAGGGCTTATGGGAAGGAGGGGTAGGACACCAACTATAGTGTTTGTGTGGTCAGGTCTAATATCAATCACTATATCACTCCTTTGGGTTGCTATTGACCCTCCCTCTGGCAGTAATGATATTGGAGGATCCTTCCAATTCCCNTGATTTTTCTTGTGCTGCTCATCACTTTTTCAAGAAGCACTTGTAAGTAGCTCGGACAAGGCCTTTTCTGGTGATTCAGATTTTGTAGTTACCATAATAACATTCATTGTTCGCCAAGCTGTTGCTTATATTTTATTCATCATAGAAGGAAAGAATCATACATAGT

Protein Sequence

>Glyur000450s00024061.1
MASKSHFKHGSSMVRKIIHLSNDMDQDQEDQRENGNGSVGRATYTVHIPPTPDNQPMEISXERSTSRRVEDQYASSSMFTGGFNQVTRAHLKXKVIESESSHPQMAGTKGSSCAVPGCDVKVMTDERGLDILPCECDYKICRDCYRDVLRVGEGICPGCKEPYKEEQEMQEDPSTTVVNNQQALXLPPXAGAAGSKMERRLSLMKSGTLGRSQANDFDHAQWLFETKGSYGYGNAMWPKDSENDASSGSGSDWMAGDPNVFHEKPWRPLTRKLSISAAILSPYRLIILIRLVVLVFFLVWRVENPNDDAPWLWGMSVVCEIWFAFSWLLDQLPKFFPINRFSDLDVLKEKFETPSPTNPSGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDXGGSLLTFEAMAEAASFANLWVPFCRKHGIEPRNPESYFSLKRDPYKNKVRSDFVRDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKAMKLRRENGNDEPMENLKILKATWMADGTHWPGTWTXSAPEHSRGDHASIIQVMLKPPSDEPLTDTASDSNSMDLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIFNSQALREGMCFMMDRGGDKICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPREKEEAGRKNKKSSTVASVSEAASGEDQSLRSGGSIDDEEMSTALIPKKFGNSSLLVDSVRVAEFQGRPLADHSSIKNGRPPGALTLPRDLLDAATVAEAINVISCWYEDKTEWGLRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFTGEFIVQSLQVTFLVYLLGITVTLVLLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHFAAVIQGLLKVMAGIEISFNLTSKSSGDDEXDEYADLYVIKWSSLMIPPLTIMMVNLIAIAVAVTRTIYSEDREWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAIDPPSGSNDIGGSFQFP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00450	126651	131118	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function
GO:0016760 cellulose synthase (UDP-forming) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000450s00024061.1	PF14570.1	zf-RING_4	115	164	4.60E-16
Glyur000450s00024061.1	PF03552.9	Cellulose_synt	368	1126	0

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.498
SRR1783600	control	3.550
SRR1783602	moderate drought stress	1.855
SRR1811619	moderate drought stress	1.825

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.442
DRR006520	Root Summer glycyrrhizin high producing strain	18.124
DRR006521	Root Winter glycyrrhizin high producing strain	2.507
DRR006522	Root Winter glycyrrhizin high producing strain	2.627
DRR006523	Root Summer glycyrrhizin low producing strain	54.214
DRR006524	Root Summer glycyrrhizin low producing strain	53.494
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.735
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.774

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.757
SRR2868004	Drought Stress (root)	16.526
SRR2967015	Control (root)	9.038

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.035
SRR9715740	Leaf	22.673
SRR9715741	Leaf	27.710
SRR9715739	Root	118.090
SRR9715742	Root	154.874
SRR9715743	Root	147.958

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.601
SRR8749028	MeJA induced 9h	63.390
SRR8749029	MeJA induced 9h	45.456
SRR8749030	Uninduced	80.887
SRR8749031	Uninduced	31.641
SRR8749032	Uninduced	32.273

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.204
SRR8400027	Control - Root	14.609