Gene detail

Gene detail information of Glyur000450s00024059

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32190.1	5.00E-109	alpha/beta-Hydrolases superfamily protein
NR	KEH19097.1	0	alpha/beta superfamily hydrolase [Medicago truncatula]
COG	YP_007114375.1	9.00E-33	alpha/beta hydrolase fold protein [Oscillatoria nigro-viridis PCC 7112]
trEMBL	tr\|A0A072TNV6\|A0A072TNV6_MEDTR	0	Alpha/beta superfamily hydrolase {ECO:0000313\|EMBL:KEH19097.1}

Sequence

Transcript Sequence

>Glyur000450s00024059.1
TTTTCAAATAAAAATGTCAGTTAGCAGAAATACAATATGACCCGCTACCCTGAATAGCTGACAACTATGAAGTCATGCACATAAATATAAGCTGAGTATTAAGNCCTCTGTCCTTCCCCTTTCTCTTTCACTCACTGTGTTGCCACCGCTACACTCCACATCTCAGAGTCACAGTACTACACTTCCATCCATACTNCCACACACTACCCAGTATAGCTATCTGCAATAACATTAACACCCCTCTCTCTCCCCACTTTCTTACAACTCTGCAAATTTCCAGTGGGGCTAAAATCCCATTTTCATTATCTCTGCACTGACCCCAACAAAACAAAAAAACCTTCAACCCCACCACTGTTCTTTCTCTCTTACCACAAACCAAGAAAAAAGCTCTAAACTTTCAGGGTTGAGGAAGTCCCAGATGCACTCAGAGACTCATCTAAGCATGAAATGAGTTTTGGGTTGGTTCATCTCATTGTTGGGGGGTGAGAGTGTGAATGGGGTGCATGGTGTCTCAGCTAGCTGCTAAATTCGCATTCTTTCCACCGTCACCACCGACGTACAAGCTGAAGAAGCGTGACGACGGGAAGCTCACGGTGGTGTCGACGGCGTCGGCGTCTCCGATTCCTCACGCCGGCGATGACAGTTCCTTGGACGTTCTGCTTGTGGACACAAAACATGGCAACAAGATTGTGGCTTTCTATCTGAGGAACCCTTATGCACGCCTCACTCTTCTCTACTCTCATGGCAATGCTGCTGACCTTGGTCAACTCTATGATCTCTTTGTTCAACTCAAGGTCAATCTTAGAGTTAATCTCATGGGATATGACTACTCTGGATATGGGGCCTCTACTGGCAAGCCTAGTGAATCCAGCACNTATGCCGACATAGAGGCAATATATGAATGCCTTGAAACTGAATATGGAGTTAGCCAGGAAGAGGTAATCTTATATGGGCAATCAGTTGGAAGTGGACCAACACTGCACTTGGCAGCTAAGTTGCCAAGGTTGAGAGGCGTGGTTCTACACAGCGGCATCCTTTCTGGTCTTCGAGTGCTCTGTCATGTGAAGTTCTCGTTTTGCTTTGACATTTATAAGGGTACAGAAGATGACGTTGTCAATTGGTTACATGGTAANGGACTATGGAAAATGGCAAGGGAGTCATACGAACCCTTGTGGATTAAAGGAGGCGGTCACTGCAACTTGGAGCTTTACCCGGATTACATTCGCCATCTTTGCAAATTCATCCAAGAAATGGAGAGCATGACGACCGAAAAGCGCCTCAAAAGGATTCGGCAAAATCTGAATCTGCAATCAGAGTCGAACACCTGTTCCACCTGTAGATGCTGTAGAATGAAATATGCAAGTGTCCTGAATGCAAATGTCCTGAATGCTGTTGGCGGAGACCAAGCTGTAGCTGCATTAAGTGTTGTCACTTACCCAAGCTACCTAGTTGTAGCTGCATTAAGTGTTGTCACTTACCCAAGTTACCTAGTTGTAGCTGCATTAAGTGTTGTCATTTACCCAAGTTACCTAGTTGTTTTGGATCAACCTGCTGCACAAAATGTTCAAGGCCTAGTAGCTGTTGGCCAAAATGTTCANTGCCTAGATGCTACTACCCAAAGTGTGCAAGACCAAGTTGCTGCTGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00450	113643	119006	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000450s00024059.1	PF12695.2	Abhydrolase_5	78	234	1.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.601
SRR1783600	control	7.721
SRR1783602	moderate drought stress	6.956
SRR1811619	moderate drought stress	6.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.913
DRR006520	Root Summer glycyrrhizin high producing strain	8.977
DRR006521	Root Winter glycyrrhizin high producing strain	0.444
DRR006522	Root Winter glycyrrhizin high producing strain	0.519
DRR006523	Root Summer glycyrrhizin low producing strain	9.456
DRR006524	Root Summer glycyrrhizin low producing strain	10.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.451
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.409
SRR2868004	Drought Stress (root)	7.476
SRR2967015	Control (root)	8.012

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.187
SRR9715740	Leaf	0.220
SRR9715741	Leaf	0.124
SRR9715739	Root	1.775
SRR9715742	Root	11.150
SRR9715743	Root	9.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.619
SRR8749028	MeJA induced 9h	7.153
SRR8749029	MeJA induced 9h	4.046
SRR8749030	Uninduced	0.546
SRR8749031	Uninduced	0.148
SRR8749032	Uninduced	0.514

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.912
SRR8400027	Control - Root	9.668