Gene detail

Gene detail information of Glyur000450s00024055

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32220.1	1.00E-27	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004512483.1	1.14E-62	PREDICTED: uncharacterized protein At1g32220, chloroplastic-like [Cicer arietinum]
COG	YP_809886.1	2.00E-08	nucleoside-diphosphate-sugar epimerase [Oenococcus oeni PSU-1]
Swissprot	tr\|Q9FVR6\|Y1222_ARATH	2.00E-32	Uncharacterized protein At1g32220, chloroplastic (Precursor)
trEMBL	tr\|I1L506\|I1L506_SOYBN	9.00E-61	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G34090.1}

Sequence

Transcript Sequence

>Glyur000450s00024055.1
ATTAAAAATTTAAAGAGAGGGCCAAATTCGCGTGGCTGATGTTTAAACTCAACCGTCATCATTCTTCTTCCTTGTCTAAATTCTCTGTTTCGGTGTTTCCTGCAATCTTCATGTGCTGAGTGAGTGCCTGAACTGAACTCAGTCCCCACCGAATGGCGTCGTTTTGTTCTCTCCCTGTCGTTTCCCCTCGTCCCACTCCCTCTGCCTTCTTCTCTCTCAAAAGACCTTTCTTTCAGACTCCACCCACCTTGCATTTCAAAAATCACCGATTTGCAGTTAGAAGCAGTTATCCAGAAGCAGGTGTCAGCGATGATTCTAGACCATCCACTATAGACGTTGTGGCTGATGTTAGAAGTGAACGAATTGTAGTCTTGGGAGGCAATGGATTTGTTGGTTCTGCTATATGCAAGTCAGCAGTATCCAGGGGCATAGAAGTCATAAGCCTAAACAGGTCAGGACGTCCTACTTACTCAGATTCATGGGTAGATCAGGTTACTTGGATTTCAGGCATGTTCACTTAACCTAATGCAAAACAGATACATGAATTTTTTTTCTTCTTGTAATTGGTTATGGGCATCCAACCATTTACAGGAAGAGGGAAGAGAGAGAATTAGCACTATAAAAATTAATACACACCAATTGTAGTGATGAGTAGTCATTTATTAAGATCAGCAAAAATATGTTCACATGCTAGTTACTTCACATCTTTNATCAATGTGTTTATGTTCAGAACTTCAGATATTAATCTGTGGGGAAATTACACTCACCTCCCTTAAGATGCTTAAATGACACTCACATCACATCCCCTTTAGTTTTTAAACCAACATTGACCTCCCTTGTTTGCTTTTAAACAAACACTTATTACCCCCTCCCAAGTTAANGTCAGTTAGCTTGACAGTATAAGGCTTCTTTGGTTCTTCCATACCATAGACCTTTAGTTCTTGTTCGGTGAGAGATTCTTTGTAACGGAGCATTGGCCTCCCAACCACACAAGAAAAACGGAGGTGGGGAAATTCTCCNCAGCAAAACTACACTTCACGTACTTCATTCAGAAAAATTGAAGAAAAAAAAAATACAGTGGCATCAGAAGGAGAAGAAACATAAACTGTTACATGAAATTGGGGATTTTCTGGTATTGAGTATGCATATAGGAACTGGTATTGAAAGGTCTGGATTGAGTATCCATACTTGTATTAAAACTGAGATGGCATCCAAGGCCGTCGTTGTGCCTTGACAGAGGAGNATTCCCAAAGAAAAAAAGAACAAAGGAAAGTGATTTTAGGGCTATGAGATAATTGTATTGATGAGAATGAAATACTGTTGCAGAGGCAAGATGATAAGAATGAAATGCTTGTGAAGACATGCCTGTTTTAAGCAAGCAGAGGTCGAAAGAGTCNAATTTCTTTCTTTTACTCGGATGATTGCTAACGCCATGTAACTTAGAGGGGAGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00450	83891	86653	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000450s00024055.1	PF13460.1	NAD_binding_10	71	117	1.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.666
SRR1783600	control	11.751
SRR1783602	moderate drought stress	8.212
SRR1811619	moderate drought stress	7.995

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.569
DRR006520	Root Summer glycyrrhizin high producing strain	10.805
DRR006521	Root Winter glycyrrhizin high producing strain	3.064
DRR006522	Root Winter glycyrrhizin high producing strain	2.910
DRR006523	Root Summer glycyrrhizin low producing strain	8.275
DRR006524	Root Summer glycyrrhizin low producing strain	8.504
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.496
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.400

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.236
SRR2868004	Drought Stress (root)	8.978
SRR2967015	Control (root)	6.628

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.833
SRR9715740	Leaf	24.690
SRR9715741	Leaf	20.597
SRR9715739	Root	0.961
SRR9715742	Root	4.173
SRR9715743	Root	2.890

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.008
SRR8749028	MeJA induced 9h	2.386
SRR8749029	MeJA induced 9h	1.454
SRR8749030	Uninduced	1.655
SRR8749031	Uninduced	0.594
SRR8749032	Uninduced	0.709

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.083
SRR8400027	Control - Root	10.614