Gene detail

Gene detail information of Glyur000450s00024052.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G46880.1	homeobox-7
NR	XP_006587604.1	PREDICTED: homeobox-leucine zipper protein ROC3-like [Glycine max]
Swissprot	tr\|A2ZAI7\|ROC3_ORYSI	Homeobox-leucine zipper protein ROC3
trEMBL	tr\|K7LF40\|K7LF40_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G34061.2}

Sequence

Transcript Sequence

>Glyur000450s00024052.1
ATGTNTGGGGATTGCCAAGTGATGTCAACAATGGGAGGGAACGTAGTAGTGAACTCAGACACACTCTTCTCCTCCTCCATCCAGAACCCNAACTTCAACTTCATGCCAACCATGCCTTTCCACCCTTTTCCTCCCATGAAAGAAGAAGATGGGATGTTGAGATCAGGGAAGGAAATAGAGATGGATATTCATGAGAGTGGGTCAGGNAGTGAGCAATTAGTTGAAGACAAGTCAGGGAATGAGCAAGAAGATCAGAGTCATGAACAACAGCCTGCTACAAAGAAGAAACGCTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTTAAGGAGTGTCCACACCCGGATGATAAGCAGNGGCTGAAACTGAGCCATGAACTTGGCCTCAAACCACGCCAGGTCAAGTTCTGGTTTCAGAATCGCCGAACCCAGATGAAGGCACAACAAGACCGTGCAGATAATGTGATACTGAGAGCGGAGAATGAGACCCTAAAGAATGAGAACTATCGGCTACAAGCAGCGCTACGTAATATTATTTGTCCCAATTGTGGTGGTCCATGCATCATGGGCGCTGATCTGGGCTTGGATGATCACCAGCTTCGACTTGAAAATGCCCGCTTAAGAGAAGAGTTAGAACGTGTGTGTTGCATCACATCAAGATACGCTGGCCGCCCAATCCAAACAATGGGAGCACCTCCTTCTCTCATGCCTCCTTCATTGGATTTGGACATGAACATATACCCAAGGCACTTTGCTGACCCAAACATTGCACCTAATTGCACGGAGATGATTCCTGTGCCCATGTTGCCTCCTCCTCATGAAGCTTCACCCTTTCCAGAGGGTCATGGTGGTCTCTTACTAATGGAAGATCATGAGAAATCCCTTGCCTTGGAGCTTGCGGCATCTTCCATGGCTGAGCTTGTGAAGATGTGTCAGACAAATGAGCCTCTTTGGATCCGAAGCTGCGAGAGTGAAAGGGAAGTGCTTAATTTTGAAGAGCACGCAAGGCTGTTTTCGTGGCCACTGAATCTCAAGCACCGAAGTGAACTCAGGACAGAAGCTACCCGTGACACTGCTGTTGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTTCTTGATGCCCAAAAATGGATGGAATTGTTTCCAACANTCGTTGCTAGAGCAAAAACTGTCCAAATTATATCTTCTGGTGCTTCTGGGCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTCCATGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGCAGGGAACCTGGGCCATTGTTGATTTTCCTATTGATAGCTTTCACCAAAATTTTCACCACTCATTTCCCAGATACTGCAGGAGGTCCTCTGGTTGTGTAATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTCCATCAGATATTCTGTAACTATGTGTATAGTGGAATGGCATTTGGAGCACAGCGCTGGTTAGGAGTTTTGCAGAGACAATGTGAAAGGGTCGCCAGCCTCATGGCCAGAAACATCTCAGACCTTGGAGTGATACCTTCGCCTGAAGCGAGGAAGAACTTGATGAGACTAGCCCAGAGAATGATAAAAACGTTTAGTATTAACATGAGCACCTCTGGTGGTCAATCATGGACAGCCATATCAGATTCCCCTGAAGACACAGTTAGAATCACAACTAGGAAAATCACAGAGCCAGGACAACCCAATGGGGTGATTCTCGCTGCTGTTTCAACCACTTGGCTTCCCTATCCTCATACCAAGGTAGCAAGTAACTCATCCCAGAATGTAGAGCTAATGCTGCAAGAGAGTTGCACAGACCAGTCAGGGAGCCTTGTAGTGTACACCACAATAGATGTGGATTCTATCCAGCTAGCCATGAGTGGAGAAGACCCTTCCTGCATTGCCCTTCTCCCACAAGGGTTCATGATAGTCCCAATGGGATCATCATCATNAAACACTACTGATCACACACCATCTGAAGCAGCTACTGTCACAGGAGGACCACAATCTAGTTCTAGTAGCAACAACTCAGGAGGTTGCCTTCTCATTATGGGGATGCAAGTTCTAGCAAGCACAATCCCTTCTGCAAAGCTCAACCTTTCAAGTGTCACAGCAATCAACAACCACCTCTGCAACACCCTGCACCAAATTGAAGCTGCTCTTTGTAGCAGCAGTACCACAATTGGGTCTTGCACTGAACCGGCCACCACTAGTGCACCCCACAAGCAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00450	57102	63040	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0008289 lipid binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000450s00024052.1	PF00046.24	Homeobox	95	150	5.20E-17
Glyur000450s00024052.1	PF01852.14	START	303	527	3.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.046
DRR006520	Root Summer glycyrrhizin high producing strain	0.046
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.466
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.046
SRR2868004	Drought Stress (root)	0.021
SRR2967015	Control (root)	0.047

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.896
SRR9715740	Leaf	2.247
SRR9715741	Leaf	2.173
SRR9715739	Root	0.000
SRR9715742	Root	1.237
SRR9715743	Root	0.910

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.005
SRR8400027	Control - Root	1.012