Gene detail

Gene detail information of Glyur000449s00027103

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10050.1	3.00E-111	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003552117.1	2.05E-176	PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Glycine max]
COG	YP_003737688.1	2.00E-48	oxidoreductase [Halalkalicoccus jeotgali B3]
Swissprot	tr\|P28643\|FABG_CUPLA	2.00E-17	3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic (Precursor)
trEMBL	tr\|V7D304\|V7D304_PHAVU	1.00E-170	Uncharacterized protein {ECO:0000313\|EMBL:ESW35616.1}

Sequence

Transcript Sequence

>Glyur000449s00027103.1
GGGAGGGGGGGTGTGGCGCGGGGGTAGGGTAGCGTGGGTAGCATCTAACCACACGAGATATTTTTTTTTTTTCCGATAAAAGTAACCACACGAGATATAGTGGGGGGACAAATGCTCAATTAGAAACATGGGCTCATAATACTCTATCTAATTTCCACGCCTGCTGTTATTTGTTGTCGGAGCATAGTAACCCGACGTGAAACGCAACAAAAAAAAACCTTATTACACGAACAACATCCACTCATCCATCAGAACGGAACAACGACGATTAATTACTTACCACAATTCTGAATTGTCTCTCTCCCTGTACGCTATGGAGANCCATGGTGATCCCAATAATAATAAGCCGGTGGTTCTCATCACGGGATGCACCGATGGTGGGATAGGCCACGCGCTCGCACGCGCCTTCGCCGCGAACCGGTGCAGCGTGGTGGCCACCAGCCGGTCGCGGTCGAGCATGGCGGGACTCGAGCACGACCAAGGGTTCTTCTTGCAAGAGCTCGATGTGAAATCTGATGAGAGCGTGCGGCNAGTGGTCGACACCGTTCTCAACAAGTACGGCAAAATCGATGTGCTCGTCAACAACGCTGGTGTTCAGTGCGTTGGCCCACTCGCTGAGGTTCCCCTCTCCGCGATCCAAAACACCTTCGACACCAATGTCTTTGGTTCCTTGAGAATGGTCCAGGCTGTTGTTCCTCACATGGCAATTAGGAAACAGGGGAAGATTGTGAACGTTGGTAGTATCGCTGCTATGGCCTCTGGACCTTGGTCTGGTGCTTACACTTCTTCTAAAGCTGCTGTTCATGCTTTGACAGATACATTAAGATTGGAACTTGGGCATTTTGGAATTGATGTTGTAAATGTTGTCCCTGGAGCTGTGAAGTCAAATATTGGAGATTCTGCCGTAGCCACCTACGACCGCATGCCCGAGTGGAAACTATTCAAGCCTTTTGAAGCAGCGATCAGAGAGAGAGCATATTTTTCTCAGAGGTCCAAGTCGACCCCTACAGATGAGTTTGCTAAAAAAACTGTGGATGCTGTCCTTAAGAAGAAACCACCTGCATGGTTCTCCTATGGCCATTACTCCACGGCCATGGCTATCATGTACCATTTACCACTCTCTGTTAGGGACTTTATTTTGAAGAAAGCAATGAAATGCTGAGTCACACACAGTTCAACTATTTGAACATAGATCAACTATTTCTTTTCTGTGTTGGTTGGTGTTTTAAAAAATAAGGTAAAATAAATTGATTGTTATGCATGGTTGTTCATCATGTGGGTTGAATTACATCATACTTATGATGGGATTGAATATGCTCATCTCATAGGATTGAATTACACATGCACCCTTAATAGGCCCATACTTGTGAGCTGAATAATGCAATTCATAGTGTTTTTTTCTTTAATGATTTGTTAATGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00449	154470	158094	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000449s00027103.1	PF00106.20	adh_short	13	174	9.80E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.762
SRR1783600	control	15.920
SRR1783602	moderate drought stress	13.961
SRR1811619	moderate drought stress	13.900

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.077
DRR006520	Root Summer glycyrrhizin high producing strain	31.868
DRR006521	Root Winter glycyrrhizin high producing strain	9.844
DRR006522	Root Winter glycyrrhizin high producing strain	9.573
DRR006523	Root Summer glycyrrhizin low producing strain	18.656
DRR006524	Root Summer glycyrrhizin low producing strain	18.228
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.454

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.035
SRR2868004	Drought Stress (root)	23.701
SRR2967015	Control (root)	24.196

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.224
SRR9715740	Leaf	68.216
SRR9715741	Leaf	51.223
SRR9715739	Root	16.458
SRR9715742	Root	27.986
SRR9715743	Root	26.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.912
SRR8749028	MeJA induced 9h	22.650
SRR8749029	MeJA induced 9h	16.444
SRR8749030	Uninduced	34.368
SRR8749031	Uninduced	21.862
SRR8749032	Uninduced	39.556

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.561
SRR8400027	Control - Root	24.942