Gene detail information of Glyur000449s00027101 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22125.1 | 0 | binding |
| NR | XP_004502452.1 | 0 | PREDICTED: uncharacterized protein LOC101501926 isoform X1 [Cicer arietinum] |
| Swissprot | tr|O22193|PUB4_ARATH | 2.00E-10 | U-box domain-containing protein 4 |
| trEMBL | tr|K7LRV3|K7LRV3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G36150.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00449 | 128254 | 136745 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000449s00027101.1 | PF00514.18 | Arm | 83 | 114 | 4.00E-05 |
| Glyur000449s00027101.1 | PF00514.18 | Arm | 504 | 544 | 4.60E-06 |
| Glyur000449s00027101.1 | PF00168.25 | C2 | 2013 | 2091 | 3.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.220 |
| SRR1783600 | control | 20.928 |
| SRR1783602 | moderate drought stress | 20.360 |
| SRR1811619 | moderate drought stress | 20.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.834 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.751 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.329 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.044 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.896 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.792 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.346 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.502 |
| SRR2868004 | Drought Stress (root) | 25.112 |
| SRR2967015 | Control (root) | 26.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.687 |
| SRR9715740 | Leaf | 9.385 |
| SRR9715741 | Leaf | 12.670 |
| SRR9715739 | Root | 11.300 |
| SRR9715742 | Root | 40.465 |
| SRR9715743 | Root | 35.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.895 |
| SRR8749028 | MeJA induced 9h | 20.506 |
| SRR8749029 | MeJA induced 9h | 13.478 |
| SRR8749030 | Uninduced | 6.987 |
| SRR8749031 | Uninduced | 3.370 |
| SRR8749032 | Uninduced | 7.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.823 |
| SRR8400027 | Control - Root | 36.488 |