Gene detail

Gene detail information of Glyur000449s00027096

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39820.1	5.00E-133	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004502444.1	0	PREDICTED: trafficking protein particle complex subunit 12-like isoform X1 [Cicer arietinum]
trEMBL	tr\|G7J4D2\|G7J4D2_MEDTR	0	Trafficking protein particle complex subunit-like protein {ECO:0000313\|EMBL:AES72255.1}

Sequence

Transcript Sequence

>Glyur000449s00027096.1
ATGGACTCGGATTCTCCCAGATCCGAATCCCAAACGGACCCTTCTCCTCAACTCCCGGAAGAGCTCTGCCACGACCTCCACTCCCTCCAGGACCTAGCCATCCGCGGCGCGTGGCGCTCCATCATCGACAAGGTCTCACGCGCCAGGGCCCTCAATCTCCTCCAGAAGCCCCACGACCACCTCACCTACCTCGCCTTCAACGCCCTCGCCTTCACTAAACTCCGTCGTTTCAACGAAGCCTCCGCCGAACTCGACTCCGCCGAAGACCTCGACAGCTCCCACTACAGGTACGAAACTTACCCCAAAATCTACCCCAACCGGTTCGGATCCATGGTCCCTTTCTCCCTCCGCTGGCTCCACGCCCTCATCCCCATCAAATTAGGTCAACGCCAACAAGGCATTGACCGTCTCTACCGTCTCCTCGATTTCGTCCGCGAAAAAATCAACGACAAAAAACACAACAACCTCAGTATCTCCCTCGGCGCGTGGAGAAGGAGAGAGGTTTTCGTCGTGAACTGCATAATAGGCAACATTTGGGTCACAAGGAGTTTGGGCCTCATGAAGGACCTTCTCTCTCGTGTTGATTTCGACCCTTTGTTGATTTCGCAACTCGGGTACATCCAATTGCAAGTGGGTGACTTGGAAGGTGCGAAAGCTTCGTTTTTGAAAGTGGAGAATGAAGGGAAGAGTGATGGGTCGTCGTTATTGAGCGAGGTTGAGGTTAAGAACCTCGTGAATAGAAACAAGGCATTGGTGTATATGGTTGGGAAGGATTATGTGTCTGCGGTGAGGGAGTATGAAGAGTGCATTGAGAGGGATAATGCGGATGTGGTGGCTGTTAACAATAAGGCTCTTTGTTTGATGTATCTGAGGGACTTGTCTGATTCAATTAAGGTGTTGGAAAATGCACTTGAGAGGGTACCCACTGTGGCTCTCAATGAGACCCTTGTTGTCAATTTGTGTAGTATGTATGAGTTGGCTTATGTTAATCACTCTGATATTAAGAGAACTCTTAGTAGTTGGATTGCTCGTGTTGCTCCTGATGACTTTGATGCAACTTGTACTCACAAAAATAGTGGAGGTGGTGGTGGATTTCATTTTGTGCTGGAGGTTGGGGAAGGACTGTTTGTGCTTGCCTTTAGAAGAGTGGGTTATGCAGTGAATAATCGGGTTAATAATGCAATTTGGAAACGATGTAGTCATCCAATCGGGTTAAGAATCAGGTTACTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00449	59389	61919	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000449s00027096.1	PF13414.1	TPR_11	247	308	2.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.801
SRR1783600	control	18.636
SRR1783602	moderate drought stress	19.743
SRR1811619	moderate drought stress	20.969

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.396
DRR006520	Root Summer glycyrrhizin high producing strain	13.795
DRR006521	Root Winter glycyrrhizin high producing strain	12.338
DRR006522	Root Winter glycyrrhizin high producing strain	13.145
DRR006523	Root Summer glycyrrhizin low producing strain	11.259
DRR006524	Root Summer glycyrrhizin low producing strain	10.820
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.369
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.031

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.676
SRR2868004	Drought Stress (root)	8.907
SRR2967015	Control (root)	8.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.591
SRR9715740	Leaf	3.409
SRR9715741	Leaf	3.931
SRR9715739	Root	13.738
SRR9715742	Root	6.834
SRR9715743	Root	8.656

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.957
SRR8749028	MeJA induced 9h	2.379
SRR8749029	MeJA induced 9h	2.637
SRR8749030	Uninduced	1.057
SRR8749031	Uninduced	1.158
SRR8749032	Uninduced	2.002

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.900
SRR8400027	Control - Root	8.337