Gene detail

Gene detail information of Glyur000449s00027094

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10180.1	0	slufate transporter 2;1
NR	XP_003538517.1	0	PREDICTED: sulfate transporter 2.1-like [Glycine max]
COG	YP_006180043.1	2.00E-70	sulfate transporter family protein [Halobacillus halophilus DSM 2266]
Swissprot	tr\|O04722\|SUT21_ARATH	0	Sulfate transporter 2.1
trEMBL	tr\|I1LN03\|I1LN03_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G36210.1}

Sequence

Transcript Sequence

>Glyur000449s00027094.1
ATGGTCGCTTCAGTAGTGAGTTGCACGTTAGAGGAGATGAAGGACCTTGAGAAGAATGGCAACGACAACAACAACAACAACAACAACAACAGGGCTCTGTGGGTGCTGAGTCCTCCAGAGCCACCATGCATGCTGCGTCAGGTCTTGAACAACATTAAGGACACCCTCTTACGGTTACGTCGTCCAAATCGAAACAGATTCTTCTCTGCTCTCAGGCATCAACCTTCAATACCCAAACGCCTCTTCTCCCTGTTGCAGCACCTGTTTCCCATCCTTGCCTCATTCCAAAACTACACCGCACAAAAGTTCAAGTGCGATTTCTTTGCGGGTCTAATCATTGCAATCTTTGCCATTCCCNAGTCTTTGGGAAATGCGACTTTGGCGCAGCTAAGTCCTGAATATGGCCTCTATCCCATTCATGATTCCATTGCTTACACTCAGCTTGTTTTCACCGCTACTTTTTTTGCTGGTATCTTCCAGGTTTGGGTTTTTGGTGGATTATCTATCCCATGCCACGATAGTGGGGTTCTTGGCAGCAGCTGCCTTAGGCATTGGGCTACAACAACTAAAGGATTATTTGGGATAACAAACTTTACCAACAAAATTGATTTAATTTCTGTGATGAAAGCTGTTTGGACTTCCTTCAAAGACCAATCAGCGTGGCATCCTTACGATTTTGTTATTGGATTCTCATTTTTGTCTTTCATCCTATTTACCAGATTCCTGGGGAAAAGGAAAAGGAAACTCTTGTGGTTGTCACACATTGCTCCTCTCCTTTCATTCATTGTATCCTCTGTTATTGGATACAGAGTAAATGTTAATCAGCTCAAACCTGAGGACTATAAAATTGAAGTCTTAGGACCAATCAAAGGAGGTGGCATGAATCCAAGCTCACTCAACCAGTTACAACTTGATGGTAAATTTTTGGGTCCTTTGATCAAAATTGGGTTGACCATTGCTGTCATTTCAACCACGGAAGCTATAGCTGTTGGTCGATTATTTGCATCACTAAGAGGTTACAATATTGATCCAAACAGAGAAGTGCTATGCTTAGGCATAATGAACATTGTTGGATCCTTCACTTCTTGCTACGTTGCATCAGTGCAGATGACGGNATCATTTGCAAAGATAATTCTGATCTCAATTCAACCCGGTATAGCGGTTGTTGGAAGGCTTCCAGGAACTGATGCATTTGGTGACGTTGAACAATATCCAATGGCGATCAACATTCCANGAAGATGGGTGATTGACGAAGAAGCTGAGGATGGTAAAGGAGAAACCACCTTTAATTTAAAGTCGTCATTCTTGATACCACGAGTGAGTCATGGAGTAATTAAATTAAGCATTAACCCATTTAATTATTGCCTGAAATTTAACTGTTGTATAGGTCTTGTGAATATTGACACGGCGGGAATTGCTTCGCTGGTGGAGCTGAATAAGAATCTGACATCACATGGAGTGAAATTAGCCATCGCTAACCCGAGGTGGCAAAAGATTTTCACGGGACAGACAAAGTTCTCCCAAACACTTCAATTTATGGCTTCTTCAGCGGTGGAGANCTGCAGATTTGAGAAGGATAGGCTGCAGGTGGACATTGAGAAGAACTACACCCAGGAACATGTAAGGTCTCAGTGGGTGCTTAACGCTCCTGAGCCCCCAAGTCCCTGGCGTGTGGCCACAGACTCCGTCAGGAAAACCATCTCGCACTGTCGTCAAAAGTTTTCCTCTCTCAGAGACCAACCCTGCACCACACTCCTCCTCTCGGTTTTGCAGGTCATTTTTCCCATTCTTTCATGGGGCAGAAACTACACTGCTGCTAAATTCAGGAAAGATTTTCTTGCAGGCCTCACTATTGCAAGTCTCTGTATTCCCCAGAGCATAGGGTATGCGACCTTAGCNAAGCTTGATCCTCAATATGGCCTTTATACGAGTGTTGTGCCACCGCTTATCTATGCTGTAATGGGAACTTCAAGAGAGATAGCAATTGGTCCNGTGGCTGTGAAANTANTAGACCCTGCTTCTGATCCACTGGGTTATACAAAGCTGATTTTTCTTGCTACTCTCTTTGCTGGTATCTTTCAGACTGCGTTTGGACTCTTCAGGCTGGGATTCCTTGTGGATTTCCTGTCGCATGCTGCGATTGTTGGGTTTGTAGCAGGAGCAGCCATTGTGATTGGCCTTCAACAGTTGAAGGGACTGTTGGGACTCACTCATTTTACGACCAAAACCGACATAATCTCTGTCATGAAAGCGTGGAACCCTCGTAATTTTATCCTCGGAGGCTCGTTCTTGGTCTTCATCCTAACGACTAGATTTCTGGGTAAAAGGATGAAGAAGCTGTTCTGGTTGTCATCAATCGCTCCACTTGTATCTGTTATACTCTCAACTCTAGTTGTTTTTCTGACACGGGCCGATAAAAATGGAGTTAAAATTGTGAAACACGTCAAAGGGGGACTCAATCCAAGCTCCATCCATCAGTTAGACTTTAACAATCCCTATGTTGGAGAAGTCGCCAAAATTGGACTCGTGGAATCTGTTGCTGTTGGACGATCTTTTGCATCCATCAAAGGATACCAACTTGATGGAAACAAGGAGATGATGTCAATTGGCTTAACAAACATCGTAGGATCTCTCACCTCCTGCTATGTTGCAACTGGTTCTTTCTCCCGTACTGCTGTTAATTATGCTGCTGGCTGTGAAACTCTAGTATCAAACATTGTGATGGCAATTACCGTGTTGATATCACTTCAGTTTTTGACAAAGCTCTTGTATTATACCCCAACTGCTATTCTTGCTTCTGTGATNCTCTCTGCTCTACCAGGACTCATAGACATCGGTGAAGCTCGCAAAATTTGGAAGGTTGATAAGCTTGACTTTCTTGCTTGCGCTGGAGCCTTCTTTGGGGTACTGTTTGCATCTGTTGAGATTGGTCTCCTAGTGGCGTATCCTATGGCTGTTGAGATTCCAGGGGTTGTCATCATACGTGTCAAGTCTGCGTTGCTTTGCTTTGCNAATGCCAATTTCGTTAGAGAAAGGATCATCAAATGGGTCACTCGGGAAGAATCAGAAGATGACAAGGGAAATTCAACAAGCTCCATTCAGCTCATAATTCTTGACACATCAAATTTGGTGAACATTGACACCTCTGGAATTGCATCACTTGAGGAACTGCACAGGACCATCGTCAATCCTAGGTGGCAAGTGATTCACAAGCTAAAAGTATCCAACTTTGTCNACAAAATTGGTGGCAGAGTATTTCTGACTGTTGAAGAAGCTGTTGCGGGCTGCAAG

Protein Sequence

>Glyur000449s00027094.1
MVASVVSCTLEEMKDLEKNGNDNNNNNNNNRALWVLSPPEPPCMLRQVLNNIKDTLLRLRRPNRNRFFSALRHQPSIPKRLFSLLQHLFPILASFQNYTAQKFKCDFFAGLIIAIFAIPXSLGNATLAQLSPEYGLYPIHDSIAYTQLVFTATFFAGIFQVWVFGGLSIPCHDSGVLGSSCLRHWATTTKGLFGITNFTNKIDLISVMKAVWTSFKDQSAWHPYDFVIGFSFLSFILFTRFLGKRKRKLLWLSHIAPLLSFIVSSVIGYRVNVNQLKPEDYKIEVLGPIKGGGMNPSSLNQLQLDGKFLGPLIKIGLTIAVISTTEAIAVGRLFASLRGYNIDPNREVLCLGIMNIVGSFTSCYVASVQMTXSFAKIILISIQPGIAVVGRLPGTDAFGDVEQYPMAINIPXRWVIDEEAEDGKGETTFNLKSSFLIPRVSHGVIKLSINPFNYCLKFNCCIGLVNIDTAGIASLVELNKNLTSHGVKLAIANPRWQKIFTGQTKFSQTLQFMASSAVEXCRFEKDRLQVDIEKNYTQEHVRSQWVLNAPEPPSPWRVATDSVRKTISHCRQKFSSLRDQPCTTLLLSVLQVIFPILSWGRNYTAAKFRKDFLAGLTIASLCIPQSIGYATLAKLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVKXXDPASDPLGYTKLIFLATLFAGIFQTAFGLFRLGFLVDFLSHAAIVGFVAGAAIVIGLQQLKGLLGLTHFTTKTDIISVMKAWNPRNFILGGSFLVFILTTRFLGKRMKKLFWLSSIAPLVSVILSTLVVFLTRADKNGVKIVKHVKGGLNPSSIHQLDFNNPYVGEVAKIGLVESVAVGRSFASIKGYQLDGNKEMMSIGLTNIVGSLTSCYVATGSFSRTAVNYAAGCETLVSNIVMAITVLISLQFLTKLLYYTPTAILASVXLSALPGLIDIGEARKIWKVDKLDFLACAGAFFGVLFASVEIGLLVAYPMAVEIPGVVIIRVKSALLCFANANFVRERIIKWVTREESEDDKGNSTSSIQLIILDTSNLVNIDTSGIASLEELHRTIVNPRWQVIHKLKVSNFVXKIGGRVFLTVEEAVAGCK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00449	21135	50188	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000449s00027094.1	PF13792.1	Sulfate_tra_GLY	89	137	2.90E-12
Glyur000449s00027094.1	PF00916.15	Sulfate_transp	189	376	5.90E-42
Glyur000449s00027094.1	PF13792.1	Sulfate_tra_GLY	594	667	2.90E-29
Glyur000449s00027094.1	PF00916.15	Sulfate_transp	697	960	4.50E-91
Glyur000449s00027094.1	PF01740.16	STAS	982	1092	1.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.239
SRR1783600	control	0.209
SRR1783602	moderate drought stress	0.020
SRR1811619	moderate drought stress	0.023

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.124
DRR006520	Root Summer glycyrrhizin high producing strain	5.142
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	11.740
DRR006524	Root Summer glycyrrhizin low producing strain	11.673
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.330
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.292

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.611
SRR2868004	Drought Stress (root)	12.080
SRR2967015	Control (root)	5.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.697
SRR9715740	Leaf	2.166
SRR9715741	Leaf	3.766
SRR9715739	Root	2.127
SRR9715742	Root	7.992
SRR9715743	Root	6.879

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.720
SRR8400027	Control - Root	23.169