Gene detail

Gene detail information of Glyur000448s00026709

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28260.1	0	cyclic nucleotide-gated channel 15
NR	XP_004487089.1	0	PREDICTED: putative cyclic nucleotide-gated ion channel 15-like isoform X1 [Cicer arietinum]
COG	YP_724331.1	2.00E-25	cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9SL29\|CNG15_ARATH	0	Putative cyclic nucleotide-gated ion channel 15
trEMBL	tr\|V7BZY0\|V7BZY0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22181.1}

Sequence

Transcript Sequence

>Glyur000448s00026709.1
AGAAGTTGATACTAATGGGATTTGGTAATCCAAGATCTGAAAGGTTTGAAGATGATCCTGAAGCTAACGGAGACAATGGGATTATTAAGGTTAAATACCACATTGATGGAACACAAATACCTGAGCCAGCTAGTTCCAAAACGGTTCAAAGGAAAGCAGTGGCAGGGAAGAAGTTTCTGAAAGCTAGAGTGTTGTCAAGGGTATTCTCAGAGGACTACGACAGAGTAAAACGAAGGATATTAGATCCTAGGGGACAAACCATCCACCGTTGGAACAAGATTTTCTTGGTAGCATGTTTAGTGTCTTTGTTTGTGGATCCTCTCTTCTTTTACTTGCCGGTAGTTCGAGATGAAGTGTGCATTGACATTGGTATAACTCTTGAGGTTATTCTCACAACTGTGAGATCAGTGGGGGATGTCTTTTACATGATCCAGATTTTGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCCCAGGTTTTTGGGAGGGGAGAGCTTGTTCTAGGCTATTCTCAGATTGCTGTTAGGTACCTCCGCAAGGGTTTTTGGTTAGACTTCATTGCTGCCTTGCCTCTTCCTCAGGTGTTGATTTGGATTGTGATCCCAACTCTTAGGGGTTCAACCATGGCAAACACAAAAAACGTCCTACGTTTTTTCATCATTTTCCAATACCTTCCGAGGCTGTTTTTGATTTTTCCACTTTCATCACAAATTGTAAAAGCCACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACCTCATGCTCTACATGCTGGCCAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCAATTGAACGTCAAGAAGCATGTTGGAGAAGTGTCTGCGATCTGGAGAAGTCATTTTGTCAATATGGATACTTTGATTGCCACAGGGTTAAAGATACCCTCAGGCTCTCCTGGTTTATAGCTAGCAATATCACAAATTTGTGTTCACCAAATGCTGGCTTTTATCCGTTTGGTATATATGCTGATGCCATGACTTCTCAAGTTACATCCTCGGCATTCTTTAATAAGTACTTCTTTTGTCTCTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGGGAAATAATGGTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCTTTGCTGATTGGTAATATGCAGACATACCTCCAATCAATAACTGTTCGCCTAGAGGAGTGGAGGGTGAAAAGAACCGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAACTAAGAGAGTCTGTGCGTAAGTATAATCAATATAAATGGGTGGCTACACGGGGAGTAGATGAAGAAACTCTTCTCAAAGGACTTCCAGTGGATCTTAGGAGAGACATCAAACGCCACCTTTGTCTTGAACTAGTTCGAGGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGTTGGACGCAATATGTGAAAGGCTAAAGCCTGCATTGTGCACAGAGGGCACTTATCTTGTTCGTGAGGGTGATCCAGTGAATGAGATGCTCTTCATAATTCGAGGCCATCTCGATTCTTACACCACAAACGGAGGCCGCGCTGGGTTCTTCAACTCCTGTCGTATTGGGCCGGGTGATTTCTGTGGTGAAGAGCTGTTGACATGGGCCTTGGACCCACGGCCCAGTGTGATACTCCCTTCATCCACAAGAACAGTCAAAGCCATCTCAGAAGTAGAGGCCTTTGCACTCATAGCCGAAGACCTAAAATTTGTTGCATCTCAATTCAGAAGACTACATAGTAAACAGCTTAGGCATAAGTTCAGGTTTTACTCACACCAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAGGAAGCTGCTGATAGGGCTAGTAGGGAGAATAATAATAACAATAATAATCTCGCAGCTTTTGATGAGCCTCAAACACCAACATCTGGTTCAGGAACAAGGTTGGCGATATTGAGGAACACTAGGAAAGGTGTCAATGTGCGTTCTGGGACAGATTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00448	3865	7472	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0006813 potassium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005249 voltage-gated potassium channel activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000448s00026709.1	PF00520.26	Ion_trans	130	395	9.20E-17
Glyur000448s00026709.1	PF00027.24	cNMP_binding	500	594	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.554
SRR1783600	control	0.524
SRR1783602	moderate drought stress	0.324
SRR1811619	moderate drought stress	0.347

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.470
DRR006520	Root Summer glycyrrhizin high producing strain	0.448
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.267
DRR006524	Root Summer glycyrrhizin low producing strain	0.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.910
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.908

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.346
SRR2868004	Drought Stress (root)	4.554
SRR2967015	Control (root)	5.813

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.754
SRR9715740	Leaf	1.105
SRR9715741	Leaf	0.832
SRR9715739	Root	0.145
SRR9715742	Root	0.805
SRR9715743	Root	0.463

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.036
SRR8749028	MeJA induced 9h	0.057
SRR8749029	MeJA induced 9h	0.007
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.885
SRR8400027	Control - Root	6.191