Gene detail

Gene detail information of Glyur000447s00016650

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26742.1	0	DEAD box RNA helicase (RH3)
NR	XP_003626109.1	0	DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
COG	YP_004056955.1	5.00E-116	ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
Swissprot	tr\|Q8L7S8\|RH3_ARATH	0	DEAD-box ATP-dependent RNA helicase 3, chloroplastic (Precursor)
trEMBL	tr\|Q2HUZ8\|Q2HUZ8_MEDTR	0	Helicase, C-terminal; Zinc finger, CCHC-type; GUCT {ECO:0000313\|EMBL:ABD32851.1}

Sequence

Transcript Sequence

>Glyur000447s00016650.1
ATGGCTTCTGTAACGGTCACAGGTGTTTCCTCCGTTTGTCAACTTCCCTCTCTCGAAGTTTACAAGAGACCAACCACCGCTTCCTCCGTTAGGTTGCACTGTTCTGACACCAAGTCCCGCCACAACAACCTCCTCAGAGCTCACCGTCACGCCAACCTCAAGAGCTTTGTTCCTTCCGCCATTGCTACGCCCAATTCCTCTTCCTCTTCCCTCCTCAGTGAAGAAGCATTCAAAGGGTTAGGTCGCGGCTTCTCCGACGACGACGACGACTTCGCCTCCAAAATCNCTTCCGCTAACTCCGACGAACTCGACATTTCCAAGCTCGGTTTGCCTCAGCGCCTCGTCGATTCACTCATCAAACGTGGAATTACCAATCTCTTCCCCATTCAGAGAGCCGTGTTAGTACCTGCACTAGANGGTAGAGATATCATTGCCCGAGCAAAGACTGGGACCGGGAAAACATTGGCATTTGGGATTCCAATTATTAAAGGCATCACTGAAGATGAGAATGCGATTCCTTACAGGCGCTCTAGTCGTCTTCCTAGAGTTTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATTAAAGAGTCTGCGCCTTATCTGAACACGGTCTGTGTTTATGGGGGTGTTTCTTATGTTAGCCAGCAGAGTGCGCTTTCGCGTGGGGTTGATGTGGTGGTCGGAACGCCCGGTAGGATAATTGACCTCATAAANGGGAACACCCTTAAGCTCAGCGAGGTTCAGTATTTGGTCCTNGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTCATTTTGGAAAAGCTCCCGTCNCAGAGGCAGAGCATGCTTTTTTCTGCAACCATGCCCACTTGGGTGAAGAAGTTGGCAAGAAAATATTTGGACAATCCGTTGACAATTGATTTGGTTGGCGAAGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATATCAGCCACTTCCACTTCAAAGCGGACAATTCTTTCTGATCTTATAACCGTTTATGCAAAGGGTGGAAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACGAATAGTATAACTTCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCAGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTGCCCAATGATCCCGAGACTTTTGTACATCGNTCTGGCCGTACTGGGCGTGCAGGAAAACTAGGTACTGCCATTCTGATGTACACCGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTNGGCTGCAAATTTGAATTTGTTAACCCACCAGCCATGGAAGATGTTTTGGAGGCATCTGCTGAGCAAGTTGTTGCGACACTTAATGGAGTTCATCCCGAGTCTGTTGCATTTTTCACCCCAACTGCACAAAGACTGATTGAAGAACAAGGAACAAATGCCCTTGCAGCCGCACTAGCACATCTGAGTGGATTCGCCCGACCTCCATCTTCCCGGTCTCTTATCACGCATGAACAGGGATGGGTTACATTGCAACTGACTCGAGATTCAGAAAATCCTAGAAGATATTTTTCAGCAAGATCAGTCACCGGATTTCTTTCTGATGTATATTCTGAAGCTGCTGATGAAGTTGGAAAAATACAATTAATTGCAGATGAAAAGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGCTACTTAATAAGGAGATACCACCTGGAAACACTATTTCCAAGGTCACCAAGTTACCTCCTTTGCAAGACAATGAGCCTGCAAGTGATTTCTATGGGAAGTTTTCTGATAGAAGTAACCGAAGAAGTCCTAGGGATCGGAGAGGTGGTTTTAAATCTTCACGAGGATGGGGTGGGGGCCGAGATTCTGATGATGAGTTTGGTGGTGATTCGTATAGAAGAGGTGGTAGAAATTTTAAAGCCGGCAACAGCTGGTCTAGAGCAGAAAAAAGCNGCGGTCGGGATGATTGGCTGATTGGAGGCCGACGAACAAGCAGGTCTTCATCATCAGACAGAAGCTTTGGAGGCTCCTGTTTTAATTGTGGAGAATCTGGGCATCGAGCGTCAGATTGTCCAAACAAGCGAGGCTCTTTTTAGTCCTCACTTGTTCATTTTTGGGCACCACTTTGTCCAAAGACNTGAGCACGGAGCTGCTGCCACTGTTGTTGTTGGCCAATTGGGGTCAGAAGATTGAAGGATGCATCGAGAAATAATTACAGAATCGATATTTATTTGCATCTCGTGTTGGCGGGAATCTCCATAGGGGTCTCCGTTATAGGTCGTCGTTTTTTTCTTTTCTTTTCAGTTTTGATGTAAAATTTAGCATTTGTTTTGGGCAGTGGTATTTGACAATAACAGTTTACAGCGTAGTTTTGTATCTTATTTTTTGGGAAGAAAAAAGTGGGGGATGTTGGCGGTTGTGATCCTGTATTCTACTTAACCATGCTACTATTTAAGATCTTTTTTCAACCTTAACGGTTTAGAAATAGACAGGAATGAATACCTTTAAATGAAAAATGAAATGCCAAATCTTTATGCAAAAGATGTTCAGANGTTTCCAATCCATGGTACACAGTTCTTATGAAAACTAGGATCATGGATGTTGTTCTCCCCTCCCTCCCAAAAGTTTCTTCTCTCAATCTCAGGCTGGCTCGCAAAAACAAATAAGTTTTAAGATCTCTGAGGGCATCGTGTCTTATTTTTATACTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00447	102554	107707	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

GO:0004386 helicase activity

GO:0005524 ATP binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000447s00016650.1	PF00270.24	DEAD	128	300	1.30E-44
Glyur000447s00016650.1	PF00271.26	Helicase_C	374	445	6.00E-25
Glyur000447s00016650.1	PF08152.7	GUCT	532	633	6.80E-26
Glyur000447s00016650.1	PF00098.18	zf-CCHC	726	742	7.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.393
SRR1783600	control	9.401
SRR1783602	moderate drought stress	9.960
SRR1811619	moderate drought stress	9.922

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.905
DRR006520	Root Summer glycyrrhizin high producing strain	15.739
DRR006521	Root Winter glycyrrhizin high producing strain	21.070
DRR006522	Root Winter glycyrrhizin high producing strain	20.987
DRR006523	Root Summer glycyrrhizin low producing strain	16.277
DRR006524	Root Summer glycyrrhizin low producing strain	16.112
DRR006525	Leaf Summer glycyrrhizin high producing strain	86.631
DRR006526	Leaf Summer glycyrrhizin high producing strain	85.801

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.823
SRR2868004	Drought Stress (root)	17.522
SRR2967015	Control (root)	20.992

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.046
SRR9715740	Leaf	96.085
SRR9715741	Leaf	47.312
SRR9715739	Root	9.690
SRR9715742	Root	13.921
SRR9715743	Root	13.080

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.695
SRR8749028	MeJA induced 9h	8.646
SRR8749029	MeJA induced 9h	6.812
SRR8749030	Uninduced	4.386
SRR8749031	Uninduced	2.688
SRR8749032	Uninduced	2.067

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.424
SRR8400027	Control - Root	22.190