Gene detail

Gene detail information of Glyur000447s00016643

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09560.1	1.00E-80	germin-like protein 5
NR	XP_006576138.1	4.27E-131	PREDICTED: germin-like protein 21 isoform X1 [Glycine max]
COG	YP_006592134.1	3.00E-09	oxalate decarboxylase family protein [Methylocystis sp. SC2]
Swissprot	tr\|Q9S8P4\|RHRE_PEA	2.00E-110	Rhicadhesin receptor (Precursor)
trEMBL	tr\|C7S8D5\|C7S8D5_SOYBN	2.00E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G38630.1}

Sequence

Transcript Sequence

>Glyur000447s00016643.1
TCTGTCTCTAGCAAAGTCTTCTGTTGCTATAAATGCCCAAAACCCTCCACCACTTCATTCCAACAGCTCATTATTCAAACTTATACTGTGCATTTGTCTGCTTATTGGCTTCAATTAAAAGTCTCTGGCTTTTGGTCACTTTGCTTTTGCTTGGTACTCACACACATATCATATCATATAGCTAATGATGAAGCTTGCAGTTGCAGTCTTGCTGTTTCTGGTGTTAACCACCGCCTCTGCATCAGATCCCGATCCTCTTCAAGACCTCTGTGTCGCTGACCTTGCCTCCGTGGTTAAAGTGAATGGATTCGTGTGCAAAGAGGCTTCCAAGGTAAATGCATCTGATTTCTTCTCGGACATACTAGCCAAACCAGGAGCCACAAACAACACCTTTGGTTCACTGGTAACTGGAGCCAACGTTGAGAAAATCCCAGGACTCAACACCCTTGGTGTGTCAATGTCACGNATTGACTATGCCCCAGGTGGACTCAACCCACCTCACACCCACCCACGTGCCACAGAGATGGTGTTTGTGCTTGAAGGGCAATTAGATGTTGGGTTCATAACCACTGCCAATGTGCTATTCTCCAAGACCATAAAAAAGGGTGAGACATTNGCGTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGGAATGGAAACTGCTTCAGTTATTGCAGCTTTCAATAGCCAATTGCCTGGCACACAGTCCATTCCTCTCTCCTTGTTTGCAGCTACCCCACCTGTTCCAGACAATGTGTTAACCAAGGCATTCCAGGTTGGTACCAAGGAGGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAGAAGTAGGAATAGCTAGGAAGTGGNTGTAACTTATAATGTCCCTGTCTTTCATTGGTTCTTTTTATCTTAATTTGTTGCTTTACAATTCGTGTTTGGAAACTCATAAAGGAAGAATAATAAGCAAATGGGGCATATCATTCATTCCTTACACACACTTGAAATTTGAAAGATATATCCTCGCTTGNTTGTAATTTTGTTAATCAAATGTGCTATCAGTGGTTATGTGTGTCGAGCGTTGACTTCTTANTAGTTCTTTAGCAGTCTTGCATATTGTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00447	69670	71271	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0030145 manganese ion binding

GO:0045735 nutrient reservoir activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000447s00016643.1	PF00190.17	Cupin_1	61	205	1.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	147.795
SRR1783600	control	148.262
SRR1783602	moderate drought stress	168.805
SRR1811619	moderate drought stress	166.714

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	77.480
DRR006520	Root Summer glycyrrhizin high producing strain	76.284
DRR006521	Root Winter glycyrrhizin high producing strain	119.093
DRR006522	Root Winter glycyrrhizin high producing strain	114.128
DRR006523	Root Summer glycyrrhizin low producing strain	80.743
DRR006524	Root Summer glycyrrhizin low producing strain	81.864
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.958
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	251.383
SRR2868004	Drought Stress (root)	217.935
SRR2967015	Control (root)	134.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.102
SRR9715740	Leaf	58.950
SRR9715741	Leaf	53.384
SRR9715739	Root	103.153
SRR9715742	Root	84.036
SRR9715743	Root	86.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.384
SRR8749028	MeJA induced 9h	47.632
SRR8749029	MeJA induced 9h	40.855
SRR8749030	Uninduced	25.641
SRR8749031	Uninduced	14.596
SRR8749032	Uninduced	17.487

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	200.818
SRR8400027	Control - Root	181.304