Gene detail

Gene detail information of Glyur000447s00016642

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59740.1	5.00E-114	Major facilitator superfamily protein
NR	XP_004494500.1	0	PREDICTED: nitrate transporter 1.2-like [Cicer arietinum]
COG	YP_001972967.1	4.00E-10	peptide transport protein [Stenotrophomonas maltophilia K279a]
Swissprot	tr\|Q8H157\|PTR19_ARATH	3.00E-141	Protein NRT1/ PTR FAMILY 4.6
trEMBL	tr\|Q2HRU3\|Q2HRU3_MEDTR	0	TGF-beta receptor, type I/II extracellular region {ECO:0000313\|EMBL:ABD33180.1}

Sequence

Transcript Sequence

>Glyur000447s00016642.1
ATGGCAGATCAANAGGAAACAGAAGAACTCAAGCTCCTCACCCAATGGAAGAGAAAGAAAGGTGGATTCAGGGCTTCCATGTTTATTTTTGTCTTGTCAGCATTGGACAACATGGGTTTTGTGGCAAACATGGTGAGCTTAGTCCTATACTTTTATGGGGTGATGCACTTTGACCTATCCAGTTCTGCCAACACTCTCACAAACTTAATGGGCTCAACTTTCTTGCTCTCCCTTGTTGGAGGCTTCATCTCAGATACTTACCTAAACAGATTCACCACTTGCTTGCTTTTTGGATCACTCGAGGTTCTGGCCTTGGCAATGCTTACGGTTCAAGCTGCTTCAGATCATCTACACCCAGATGCATGTGGCAAGTCAAGCTGTGTGAAAGGTGGCATAGCAGTCATGTTTTACACATCACTGTGTTTGTTGGCATTGGGAATTGGAGGGGTGAGAGGATCCATGACTGCATTTGGTGCTGACCAATTCAATGAGAAGGATCCAATTGAAGCAAATGCTCTTCCAAGCTTTTTCAATTGGCTTTTGCTCAGTTCAACTCTAGGAGCAATCACAGGAGTTACGGGTGTTGTGTGGGTTAGCACACAAAGAGCTTGGCATTGGGGGTTTTTCATAATAACCATAGCTTCCTCTGTTGGCTTTGTGACCTTTGCTCTTGGTAAGCCATTCTACCGCTTCAAAACTCCAGGAGATAGCCCCACTACCAGAATTGCTCAGAACCGAAAGCTGTCAGTGCCAGAGTCACACGAAGAACTATATGAAATCAGTGATAAAGATGCAGANGGTACAGTGGAGAAGATTGCCCACACCAACCAGATGAGGTTTCTAGACAAAGCAGCCATTCTCCAAGAAAACTTAAAGCCCCAGCCATGGAAGGTGTGTACAGTGACACAAGTTGAGGAAGTGAAGATCCTAACCAGGATGTTACCAATAGTAGCAAGCACCATCATAATGAACACTTGTCTTGCACAGCTTCAGACATTCTCAGTTCAACAAGGGAATGTGATGAACCTGAAACTTGGTTCCTTTACAGTGCCAGCATCATCCATTCCTGTGATCCCCCTTGTTTTCATAAGCATCCTGGTCCCCATATACGAACTCTTCTTTGTGCCATTTGCAAGAAAAATCACTCACCACCCTTCAGGAATCACACAGCTCCAAAGGGTAGGTGTTGGACTGGTACTCTCAGCCATATCAATGGCAGTGGCTGGGATTGTAGAAGTGAAAAGAAAAGACCAAAGCAGAAAAGACCCATCTAAACCCATAAGCCTATTTTGGCTTTCTTTTCAATATGGGATATTTGGTATTGCAGATATGTTCACCCTTGTGGGACTATTGGAGTTTTTCTACAGGGAATCGCCTGAAACAATGAAATCACTATCAACTTCTCTCACGTGGTTGTCAATGTCTCTTGGTTACTTCTTGAGCACTGTCTTTGTTAATGTCATCAATGCTGTTACCAAGAGGATCACTCCAAGTAAACAAGGGTGGTTGCATGGGTTTGACTTGAATCAGAACAATCTCAACCTGTTCTATTGGTTCCTAGCCACACTTAGTTGCCTTAATTTTTTCAATTACCTTTACTGGGCCTCACGGTACAAGTACAAATNTGAAGAAGACCGTAATTCTTCAAGCCCAGTTTTGAAGCCTTTGGCTGAAATGCCTCTCAGAATGGCTGGGACAAAACAAGATTGGGAAGCCAACAGTGATGGAAACAACCAAGACTGAAGAAGGACCCTTAATGGAAGGCATATATAGGGTCAAGACAAGAATTGGATCAGGGGATATGTTCAAGACTGAATACTGATCAATAGAATAACAATGAGGCTTCTATATAATGTACTAAGCTTTGGGATGTGGAATAGGTAGTGGTTGAAATCTATGTTACGGTATATATGTGTGCTTGTATTATTGATTGCTCTTCTTGGCTCTGGCGCTATCTTGTCTTCAGAGTTTAAAGGTTTTTTTTTTTGACTTGTTCCTTTATCGCGTAAGTTGATCCACCTGGATTTGTAATTGGCTAATGGCTATTAAGTAATGTTAATCAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00447	57848	61234	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000447s00016642.1	PF00854.16	PTR2	91	473	4.50E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.223
SRR1783600	control	22.490
SRR1783602	moderate drought stress	40.978
SRR1811619	moderate drought stress	40.930

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.298
DRR006520	Root Summer glycyrrhizin high producing strain	20.335
DRR006521	Root Winter glycyrrhizin high producing strain	0.861
DRR006522	Root Winter glycyrrhizin high producing strain	0.696
DRR006523	Root Summer glycyrrhizin low producing strain	6.159
DRR006524	Root Summer glycyrrhizin low producing strain	6.262
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.519
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.391

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.314
SRR2868004	Drought Stress (root)	6.754
SRR2967015	Control (root)	8.474

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.694
SRR9715740	Leaf	3.449
SRR9715741	Leaf	5.788
SRR9715739	Root	5.228
SRR9715742	Root	5.813
SRR9715743	Root	7.184

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.010
SRR8749028	MeJA induced 9h	0.104
SRR8749029	MeJA induced 9h	0.128
SRR8749030	Uninduced	0.068
SRR8749031	Uninduced	0.074
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.029
SRR8400027	Control - Root	30.779