Gene detail information of Glyur000447s00016641.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05910.1 | 2.00E-142 | Pectinacetylesterase family protein |
| NR | KHN14201.1 | 0 | Protein notum like [Glycine soja] |
| trEMBL | tr|I1JR09|I1JR09_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38650.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00447 | 44259 | 51775 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE13 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000447s00016641.3 | PF03283.8 | PAE | 55 | 258 | 2.60E-97 |
| Glyur000447s00016641.3 | PF03283.8 | PAE | 254 | 563 | 1.10E-138 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.254 |
| SRR1783600 | control | 4.235 |
| SRR1783602 | moderate drought stress | 3.099 |
| SRR1811619 | moderate drought stress | 3.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.483 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.693 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.427 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.196 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.059 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.377 |
| SRR2868004 | Drought Stress (root) | 11.476 |
| SRR2967015 | Control (root) | 10.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.824 |
| SRR9715740 | Leaf | 0.760 |
| SRR9715741 | Leaf | 0.450 |
| SRR9715739 | Root | 2.077 |
| SRR9715742 | Root | 0.692 |
| SRR9715743 | Root | 0.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.652 |
| SRR8749028 | MeJA induced 9h | 14.348 |
| SRR8749029 | MeJA induced 9h | 14.462 |
| SRR8749030 | Uninduced | 0.928 |
| SRR8749031 | Uninduced | 1.117 |
| SRR8749032 | Uninduced | 1.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.392 |
| SRR8400027 | Control - Root | 17.882 |