Gene detail

Gene detail information of Glyur000446s00029771

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24240.1	0	Leucine-rich repeat receptor-like protein kinase family protein
NR	XP_007153491.1	0	hypothetical protein PHAVU_003G040200g [Phaseolus vulgaris]
COG	YP_004775215.1	9.00E-66	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LHP4\|RCH2_ARATH	0	Receptor-like protein kinase 2 (Precursor)
trEMBL	tr\|V7C883\|V7C883_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25485.1}

Sequence

Transcript Sequence

>Glyur000446s00029771.1
ATGCTGAGCTCGAGGCAATCCATCCGCATCTCTTCTCCTTCTTCTCCTTCTTCTTTGTTTGTTGTCATTCTCCTTCAAGCTACTCTTCTCTGTGGCCTTGCCTTCTCTGCTAACCATGAAGCCTCAACTCTTTTCTCATGGCTCCATAGTTCAGCATCACCACCCCCATCAATTTTCTCTAACTGGAACATCCTTGATACCAATCCATGCAACTGGACCTCCATAACATGCTCTTCCTCACTACCCTTTGTCACTGAAATCAACATCCAATCCATTCCTCTTGAGCTTCCAATACCTTCCAACCTCTCTTCCTTTCCCTTTCTCAACAAGCTTGTCATATCTGATTCCAATCTCACAGGAACCATCCCTTTGGACATTGGTGACTGCTCTTCCCTCACTGTTCTTGACTTAAGCTTTAACAACCTTGTTGGCTCTATTCCTTCAAGTATTGGCAAGCTACAGAAACTTGAGAATTTGTCTTTGAACTCAAACCAGCTTACTGGGAGAATCCCAAATGAGATAAGCAACTGCATTGGCCTAAAAAGTCTCCTCCTTTTTGATAACCAGCTAGGTGGGTCTATCCCACCTTTGCTAGGGAAGTTGTCAAAGCTTGAGGTTTTAAGAGCAGGAGGGAACAAAGACATAGTTGGGAAGATTCCTGAAGAGATTGGAGAATGTAGCAATTTGACAGTTTTGGGGCTGGCTGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGTAGGCTTAGCAAGCTTCAGACTTTGTCCATCTATACTACTATGCTATCTGGTGAGATTCCACCTGAGCTAGGTAACTGTTCTGAGCTTGTTGACTTGTTCCTATATGAAAATAGCCTATCAGGGTCTATTCCGTCTGAGCTTGGTAAGCTCACAAAGCTGCAACAGTTGTTTCTGTGGCAGAATGGTCTTGTTGGGGCTATCCCAGATGAGATTGGTAACTGTTCAAGCTTGAGAAACATTGATCTCTCCTTGAATTCTCTATCTGGAACAATACCTTCCTCTTTGGGGGGTCTTTCAGAACTTGAAGAGTTTATGATTAGTGATAATAATGTATCTNGTTCCATCCCTGCAAGCCTTTCAAATGCTAAGAAGCTTCAGCAATTGCAAGTTGACACAAATCAGCTCTCAGGGTTGATTCCACCAGAGCTTGGGAAGTTGTCAAATCTCATGGTGTTCTTTGCTTGGCAGAACCAGCTTGAAGGAAGCATTCCTTCAAGTTTGGGGAACTGTAGTAACCTACAAGCACTAGACTTGTCTCGCAATGCATTCACTGGTAGCATTCCTGCTAGCCTATTTCAGCTCCTAAACCTCACAAAANTGCTTCTGATTTCCAACGATATATCAGGCTCTATACCCTCAGAAATAGGAAGTTGCAGCTCTTTGACAAGGTTGAGGCTTGGAAACAATAGGATTACTGGCAGCATTCCTAAGACAATAGGCAGCCTCAAGAACTTGAACTTCTTAGATCTCTCCGGGAACCGCCTCTCAGGGCCGGTTCCTGATGAGATAAGAAGCTGCACACAGCTGCAAATGATAGACTTCAGCAGCAACAACTTAGAAGACCCTCTTCCCAATTCCTTGTCATTACTGTCTTCACTTCAGGTATTGGATGCATCTTTTAACAAGTTTTCAGGTCCTCTACCCGCNAGTTTGGGCCGCCTCGTTTCGCTGAGTAAGTTAATCCTAGGCAACAACTTGTTTTCTGGACCAATTCCTGCATCATTGGGACTATGTTCAAATCTCCAACTGCTTGATCTTAGTAGCAATCAGCTCACCGGAAACATACCAGCCGAGCTGGTTCAAATCGAAGCTCTGGAAATTGCTCTCAATCTTAGTTGCAATTCACTCAGTGGGACAATCCCAGCTCAGATATCTGCTCTTAACAAGCTTTCCATANTGGACCTTTCACATAACCAGATGGAAGGAGATTTGCAACCTCTTGCAGGGCTAGATAACCTTGTGTCCCTCAATGTTTCTTACAATAAATTCGCTGGCTATCTTCCAGATAACAAGCTTTTCAGGCAGTTATCAACAAGGGACCTCACTGGAAACCAAGGACTTTGCACTTCAGGTGAGGACTCATGCTTTGTAAAGGATTCTGGAAAGACNGGCATGGAATTGAATGGAAACGANGCGAGGAAGTCGCGAAGGATTAAGGTAGCCATTGGATTGCTGATAGCCTTAACAGTGATAATGATGGTTATGGGGATAACTGCTGTGGTCAAAGCAAGAAGAACCATTAGAGATNATGATTCAGAATTGGGGGACTCATGGCCTTGGCAATTCATACCATTCCAGAAGCTAAACTTTTCAGTGGAACAAGTACTGAGATGTTTGGTTGATAGAAATGTAATTGGTAAGGGATGTTCCGGTGTTGTTTATCGAGCCCAAATGGATAATGGTGAGGTCATTGCTGTGAAGAAGTTGTGGCCTATAACAACTGATGCAGGAGAGGCATTCAAGGATGAAAAAAGTGGAGTTCGAGACTCATTCTCAACCGAGGTGAAGACTCTTGGCTCGATCCGTCACAAGAACATTGTCAGGTTCTTGGGTTGTTGTTGGAACAGGAATACAAGGTTGCTTATTTTTGACTACATGNCAAATGGAAGTTTAAGCAGTCTACTTCATGAGAGGACTGGGAATTCTCTTGAATGGGAACTTCGGTTTGTGTGCCTTCCAAACCAACTTGAATATGGCTATATGATGAAGATCACAGAGAAGAGTGATGTTTATAGCTATGGTGTGGTTCTGTTAGAAGTCTTAACTGGTAAGCAACCAATTGATCCAACCATACCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAGAAGGGGTCTTGAAGTACTTGATCCTAGCTTACTGTCTAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCATTGGGGATAGCCTTGTTGTGTGTGAATTCATCCCCTGATGAGAGGCCAACAATGAGAGATATAGCTGCAATGCTCAAGGAGATAAAGCATGAAAGGGAGGAATATGCAAAATTTGATGTGCTTCTAAAAGGGTCTCCTGCAGCTGCAAATGGTGGGGTCCTTGCAACATCTNCATCAGCATCATCAGTTATGCAAGNTTTGAATACAAAAAGCAACAATTCAAGCTTCTCTGTGTCTTCACTTCTTCATTCATCTTCAAGTTCCAAGATGGGTTTCAAATAA

Protein Sequence

>Glyur000446s00029771.1
MLSSRQSIRISSPSSPSSLFVVILLQATLLCGLAFSANHEASTLFSWLHSSASPPPSIFSNWNILDTNPCNWTSITCSSSLPFVTEINIQSIPLELPIPSNLSSFPFLNKLVISDSNLTGTIPLDIGDCSSLTVLDLSFNNLVGSIPSSIGKLQKLENLSLNSNQLTGRIPNEISNCIGLKSLLLFDNQLGGSIPPLLGKLSKLEVLRAGGNKDIVGKIPEEIGECSNLTVLGLADTRISGSLPASLGRLSKLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGSIPSELGKLTKLQQLFLWQNGLVGAIPDEIGNCSSLRNIDLSLNSLSGTIPSSLGGLSELEEFMISDNNVSXSIPASLSNAKKLQQLQVDTNQLSGLIPPELGKLSNLMVFFAWQNQLEGSIPSSLGNCSNLQALDLSRNAFTGSIPASLFQLLNLTKXLLISNDISGSIPSEIGSCSSLTRLRLGNNRITGSIPKTIGSLKNLNFLDLSGNRLSGPVPDEIRSCTQLQMIDFSSNNLEDPLPNSLSLLSSLQVLDASFNKFSGPLPASLGRLVSLSKLILGNNLFSGPIPASLGLCSNLQLLDLSSNQLTGNIPAELVQIEALEIALNLSCNSLSGTIPAQISALNKLSIXDLSHNQMEGDLQPLAGLDNLVSLNVSYNKFAGYLPDNKLFRQLSTRDLTGNQGLCTSGEDSCFVKDSGKTGMELNGNXARKSRRIKVAIGLLIALTVIMMVMGITAVVKARRTIRDXDSELGDSWPWQFIPFQKLNFSVEQVLRCLVDRNVIGKGCSGVVYRAQMDNGEVIAVKKLWPITTDAGEAFKDEKSGVRDSFSTEVKTLGSIRHKNIVRFLGCCWNRNTRLLIFDYMXNGSLSSLLHERTGNSLEWELRFVCLPNQLEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQRRGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPAAANGGVLATSXSASSVMQXLNTKSNNSSFSVSSLLHSSSSSKMGFK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00446	122192	125720	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000446s00029771.1	PF08263.7	LRRNT_2	38	78	1.40E-05
Glyur000446s00029771.1	PF12799.2	LRR_4	131	167	1.70E-06
Glyur000446s00029771.1	PF00560.28	LRR_1	420	441	0.076
Glyur000446s00029771.1	PF13855.1	LRR_8	467	527	4.60E-09
Glyur000446s00029771.1	PF00560.28	LRR_1	588	606	0.072
Glyur000446s00029771.1	PF07714.12	Pkinase_Tyr	791	893	5.40E-12
Glyur000446s00029771.1	PF07714.12	Pkinase_Tyr	910	1001	1.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.572
SRR1783600	control	1.648
SRR1783602	moderate drought stress	1.111
SRR1811619	moderate drought stress	1.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.101
DRR006520	Root Summer glycyrrhizin high producing strain	0.067
DRR006521	Root Winter glycyrrhizin high producing strain	0.034
DRR006522	Root Winter glycyrrhizin high producing strain	0.034
DRR006523	Root Summer glycyrrhizin low producing strain	0.178
DRR006524	Root Summer glycyrrhizin low producing strain	0.210
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.016
SRR2868004	Drought Stress (root)	9.034
SRR2967015	Control (root)	9.915

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.062
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	1.965
SRR9715742	Root	0.948
SRR9715743	Root	1.425

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.637
SRR8749028	MeJA induced 9h	6.129
SRR8749029	MeJA induced 9h	3.656
SRR8749030	Uninduced	0.099
SRR8749031	Uninduced	0.068
SRR8749032	Uninduced	0.474

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.312
SRR8400027	Control - Root	2.774