Gene detail information of Glyur000446s00029767 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26340.1 | 1.00E-22 | cytochrome B5 isoform A |
| NR | AFK33484.1 | 8.09E-45 | unknown [Lotus japonicus] |
| COG | YP_168356.1 | 2.00E-06 | monooxygenase, putative [Ruegeria pomeroyi DSS-3] |
| Swissprot | tr|Q9FDW8|CYB5A_ARATH | 1.00E-32 | Cytochrome b5 isoform A {ECO:0000303|PubMed:19054355} |
| trEMBL | tr|I3RZP2|I3RZP2_LOTJA | 3.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:AFK33484.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00446 | 60039 | 65201 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000446s00029767.1 | PF00173.23 | Cyt-b5 | 50 | 80 | 1.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.229 |
| SRR1783600 | control | 4.130 |
| SRR1783602 | moderate drought stress | 3.270 |
| SRR1811619 | moderate drought stress | 2.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.551 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.044 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.245 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.884 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.686 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.652 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.785 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.509 |
| SRR2868004 | Drought Stress (root) | 10.464 |
| SRR2967015 | Control (root) | 6.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.773 |
| SRR9715740 | Leaf | 9.770 |
| SRR9715741 | Leaf | 10.919 |
| SRR9715739 | Root | 1.110 |
| SRR9715742 | Root | 2.752 |
| SRR9715743 | Root | 2.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.591 |
| SRR8749028 | MeJA induced 9h | 13.386 |
| SRR8749029 | MeJA induced 9h | 18.251 |
| SRR8749030 | Uninduced | 16.167 |
| SRR8749031 | Uninduced | 8.690 |
| SRR8749032 | Uninduced | 9.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.661 |
| SRR8400027 | Control - Root | 12.242 |