Gene detail

Gene detail information of Glyur000446s00029762.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30000.1	0	Dihydropterin pyrophosphokinase / Dihydropteroate synthase
NR	XP_004490212.1	0	PREDICTED: folic acid synthesis protein fol1-like isoform X1 [Cicer arietinum]
COG	YP_001867639.1	2.00E-71	dihydropteroate synthase [Nostoc punctiforme PCC 73102]
trEMBL	tr\|O04862\|O04862_PEA	0	Dihydropterin pyrophosphokinase /dihydropteroate synthase {ECO:0000313\|EMBL:CAA69903.1} (Precursor)

Sequence

Transcript Sequence

>Glyur000446s00029762.1
CTATTGTATAAAATTCCTGTAGATATTTGATTTTCTGGGAGAATTTGAACTGTTTCTGAATTTTCTTTTCTCCTTGTGACCAATGGATGGGGTATTGCACAATATCAGTGCATCAGCTGAAGAGAGTTAGGATATTGGCTACATATACACTTTGGAAAGCCTTTCTCAGATGAGTATTCTGAAGTATTTGGGGGCACGCAAGAATCAGCTCTATGCTGCCAGAAAGTACCTTANAGTACTGGGTTTTTCCTCTCTGCACACAGCTCCCAACTCCTCTGTGGAACTTCACTCTCAAGATGAGGAAGTAGTGATTGCTTTGGGAAGCAATGTAGGTAATAGACTACATAACTTCAAGGAAGCCTTGAAAATGATGAAGAAGTCAGGCATAAACATCACAAGACATGCTTGTCTGTATGAGACAGCACCAGCATATGTTACTGACCAACCTCGCTTCATCAACTCTGCAGTAAGAGCTGTTACTAAACTCGGGCCACACGAGTTATTGACTGCACTCAAACGAATCGAGAAGGACTTGGGACGTACCGATGGTATAAGGTATGGTCCAAGGCCNATTGACTTGGACATTTTATTCTATGGTAAATTTAAAGTCAGATCTGATATTCTCACAATTCCTCATGAAAGAATTTGGGAGAGGCCATTTGTTNTGGCCCCTTTGATGGATTTACTGGGATCAGCTATTGACAGTGATGCAGTTGCTAGCTGGCATTCATTTTCAGGCCATCCTGGTGGACTACCTGCATTATGGGAAAAGTTAGGCGGCGAGTCCCTTATTGGAGGGGAAGGTATCTATAGGGTAATGCCCTTTGCAAATGGCTTACTTGACTGGTCACAAAGAACATTGGTCATGGGGATCCTTAATTTGACTCCAGATAGTTTTAGTGATGGGGGAAACTTCCAGTCTGTGGAGTCTGCTGTTTCGCAGGCTCGATTAATGTTATCAGAGGGCGCTGATATTATCGATATNGGTGCTCAGTCTACTCGACCGATGGCATCTAGGATCTCTGTTGAAGAAGAATTAGGTAGGTTAATCCCTGTCCTGGAAGCTATTATGTCAATGCCTGAGGTAGAAGGGANGCTCATATCTGTGGATACTTTCTACTCCGAAGTTGCTTCGGAGGCGGTGCGTAGAGGGGCTCATCTTATAAACGATGTTTCCGCTGGGAAGTTAGATGCCAATATGTTTAAGGTAATGGCAGATCTTGATGTTCCTTATGTTGCAATGCACATGAGGGGTGACCCATGTACAATGCAGAACAGNGAGAACCTGAAATATGATGATGTTTGTAAGGAGATATCGTCGGAATTATACTCGCGGGTTAGAGAGGCGGAAATGTCAGGAATCCCAGCATGGAGGATTATTATGGATCCCGGCATTGGATTCTCGAAGAAAACTGAAGACAATTTAGATGTACTCACAGGACTACCTGATATCAGAGCAGAGATTTCTGAGAGAAGTTTGGCCATGTCTCATGCTCCTATACTAATTGGACCCTCAAGAAAGAGATTTTTAGGTGAAGTTTGCTCTCGTCCTGCTGCGGTGGAGAGGGATCCTGCTACCATTGCTTCTGTCACANCCAGTGTGTTGTGTGGGGCTAATATTGTTAGGGTGCATAATGTCAGAGATAATCTGGACGCCGTGAAGCTCTGCGACGCAATTCTAAGACAGAGAAGTTCTTCCATGAGATTTAGACAATGAATTCACCTTGCTACGCCAGTTCTGGTACCGATATTTTTTGCAATGCTACCTCTTAAGTCTATGAATTTGGCTTCATGCAACAACTCTATTGCTGTTCTTTGCCATGTCATGCTACTCCAAGGTCACATATAGAACACCGTAATGCTGCTACTGCCAGAGTAAAGAAGCATGAAGGACATGTAGAATGAAAATATACATGTCTTTCAATGAATTGAACTCTAAACTTATGTCTCGTAGTTATTTCATTCCTTAACATGTATTTGATTCACAGATTTTNTTTCAACCCTTCACTTGTAACTTATTGATTGATAGAGTTGTAATATGCAATAATGATCAATCCTTGCTTATTATCTAGTGTGTTTGGAATCACGTCAGGAATCTGTCTGACGCACGTTCAGGTTGAAGTCTCCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00446	36330	39230	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13941	folKP	EC:2.7.6.3 2.5.1.15	Folate biosynthesis	map00790

Gene Ontology

biological_process

GO:0009396 folic acid-containing compound biosynthetic process

GO:0042558 pteridine-containing compound metabolic process

GO:0044237 cellular metabolic process

molecular_function

GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity

GO:0004156 dihydropteroate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000446s00029762.1	PF01288.15	HPPK	47	172	1.30E-38
Glyur000446s00029762.1	PF00809.17	Pterin_bind	235	455	1.30E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.605
SRR1783600	control	2.502
SRR1783602	moderate drought stress	2.584
SRR1811619	moderate drought stress	2.541

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.130
DRR006520	Root Summer glycyrrhizin high producing strain	4.221
DRR006521	Root Winter glycyrrhizin high producing strain	3.414
DRR006522	Root Winter glycyrrhizin high producing strain	3.247
DRR006523	Root Summer glycyrrhizin low producing strain	6.309
DRR006524	Root Summer glycyrrhizin low producing strain	6.230
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.083
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.983

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.774
SRR2868004	Drought Stress (root)	5.552
SRR2967015	Control (root)	5.435

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.626
SRR9715740	Leaf	2.593
SRR9715741	Leaf	2.110
SRR9715739	Root	2.734
SRR9715742	Root	3.471
SRR9715743	Root	4.747

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.719
SRR8749028	MeJA induced 9h	7.816
SRR8749029	MeJA induced 9h	9.016
SRR8749030	Uninduced	4.167
SRR8749031	Uninduced	3.701
SRR8749032	Uninduced	3.704

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.091
SRR8400027	Control - Root	4.314