Gene detail

Gene detail information of Glyur000445s00020021

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62960.1	2.00E-158	ACC synthase 10
NR	XP_004511632.1	0	PREDICTED: probable aminotransferase ACS10-like [Cicer arietinum]
COG	YP_004582080.1	3.00E-54	1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|Q9LQ10\|1A110_ARATH	0	Probable aminotransferase ACS10
trEMBL	tr\|G7KEV4\|G7KEV4_MEDTR	0	1-aminocyclopropane-1-carboxylate synthase {ECO:0000313\|EMBL:AES94161.1}

Sequence

Transcript Sequence

>Glyur000445s00020021.1
GGATGGGGGGCGGGTGGACGAGGATGGCGAGTGCGCATAGTATGCTAAAATGAGCGGCAAATGTAACTAACTACCACTCGAGAGGAGAATGAATATCACAACGAGGAAGGACCCCGCGCCCGCACGCAGAGGAAAAGGACATATGGTTTGGGATCATTACAGTTATCCCATCCTCCAATCCATCTCCATTCGTCAATGCCCACACACTACACACTATAATTATTGGCTGNCTCACACAACATGATTGAGGAGGACTTTCGAAAATCCAAAATTCCTTTCCCTCTCACTCTCTTCTCCTCCTCTGTATTTTCCTCCCCCATTAACCCAATCCTCCTTAATTACATTACCATTAATACCAGTACTAATTAACACAACACAATGTTTTTGTTGTGGATGATGATGATGACATAAGTGCATTCGATTTCCCAATGCTTTTGTGTGAGAGGAACAAAGCAAAAGCAAAAGCAAAAGCAAAAGCATTCTTGTGTGGTAGTGGGGATGAGATGAGAGTGATAGTGCCTTTGCAAGGAGTAGTCCAAGGCACAGGGGGTCTTTTCTGGGGTTCAGTTATCCCTTGTGCTCTCTTTTATTTTCTTCAGCTCTACTTCAAGAACCGTAACCACCACCCTCCTCCATCTCCTCCTCNCAACTCTTCCCACGAGCTTCCGCTTCCTCGCACTCTCTCCCCGCGGGTCAGGGGTGCCACCGCCTCTTCTTTCANATCGGGTCGGGTCAATTCCATCGCCGCAGACTCTCCTTATTACGTTGGTTTACGCAAGGTCGCCGATAACCCCTACCACCGGATTCATAATCCCCACGGTGTTATTCAGCTTGGTTTGGNCCAAAACACCCTATCCGCGGACTTGATTCAGGATTGGATTCTTCACAGTGGAAGCGCCGCTATACTGGGGACACAGCCAAATTGCGGTGGCCCCGATATCACGCGACTTGCACCTTACCATGGATCCATGGAGTTCAAACTGGCTGTGGCTGGTTTCATGTCTCAAGTTCTGGAGAAGCCAGTTTTCTTCAACCCTTCACATATGGTGCTAACTGCAGGTGCCACCCCTGCCATTGAAATTCTAACCTTCTGCCTAGCAGATAATGGAAATGCATTCCTTGTTCCCACGCCTCATAGCCCTGGCTTTGATGGGGATGTAAAATGGCGAACTGGGGTGGATATAGTACCTGTTCCCTGCCGCAGCGCTGATAACTTCAATTTAAGCATAACTGCACTTGAAAGAGCCTTCAACCAAGCAAAGATACGTGGTCAAAAAGTTCGTGGAATCATAATAACAAACCCCTCAAATCCTGCTGGCAAATTGATAAGCCAGGAAACACTGCTTGATCTTCTGGACTTTGCTAGAGAGAAGAACATTCACATAATCTCTAATGAAGTATTTGCAGGCTCTGCTTATCGAAACGAGGAGTTTGTGAGCATGGCAGAAATCATTGAAGCAGAAGATCATGATCGGGACAGAGTTCATATAGTGTTTGATTTATCAAATGAGCTCTCTTTTCCGGGTTTCCAGGTTGGTGTTATCTACTCCTATAATGAGAATGTGGTGGCTGCTTCCAACAAATTGACAAGGTTCTCAACTGTTTCTGCTCCAACCCAGCAATTGCTTATCTCCATGCTTTCAGATACAAGATTTATACGAAAATTCATTGAGACTAACAAACTGAGGCTGCGGAAAATGTATGATGCATTTATGGCAGGATTGGAGCAGTTTGGGATCGAGTGCACTAGGAGCAGTGGTGGTTTTTGTTGCTGGGCTGACATGAGTTGGTTAATCCGCTCTTACAGTGAAAAGGGGGAGCTTGAGCTCTGGGATAGATTGCTGAATGTAGCTAAGATCAATGTTACCCCGGGATCCTCTTGTCACTGTATTGAACCTGGATGGTTCTGTTTTTGCTTGGCTACATTGTCTGAAAAGGATATTCCTGTGGACAATATTCGTGGCCTCGTAGTCCAAGATGATTTCTACCGTCCTCAAATTAGTACTGAAATGGCTTCAGGTGCAATTACCAAAGGAACAATCACTAATCTCGACCTAAAGAAGCGGCTTCACTCTTACTATCAGTTTAATCACCTTACAGTTACACAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00445	152572	155808	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000445s00020021.1	PF00155.16	Aminotran_1_2	169	505	1.50E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	94.790
SRR1783600	control	95.948
SRR1783602	moderate drought stress	114.437
SRR1811619	moderate drought stress	113.510

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.423
DRR006520	Root Summer glycyrrhizin high producing strain	29.947
DRR006521	Root Winter glycyrrhizin high producing strain	8.156
DRR006522	Root Winter glycyrrhizin high producing strain	8.033
DRR006523	Root Summer glycyrrhizin low producing strain	33.424
DRR006524	Root Summer glycyrrhizin low producing strain	34.828
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.303
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.044

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.139
SRR2868004	Drought Stress (root)	8.038
SRR2967015	Control (root)	6.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.422
SRR9715740	Leaf	20.801
SRR9715741	Leaf	22.073
SRR9715739	Root	33.583
SRR9715742	Root	42.370
SRR9715743	Root	39.715

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.214
SRR8749028	MeJA induced 9h	1.837
SRR8749029	MeJA induced 9h	0.243
SRR8749030	Uninduced	0.888
SRR8749031	Uninduced	0.454
SRR8749032	Uninduced	0.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.350
SRR8400027	Control - Root	73.282