Gene detail

Gene detail information of Glyur000445s00020020.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12460.1	0	Leucine-rich repeat protein kinase family protein
NR	AES94162.2	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004775215.1	2.00E-48	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGE4\|Y1124_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (Precursor)
trEMBL	tr\|G7KEV5\|G7KEV5_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES94162.2}

Sequence

Transcript Sequence

>Glyur000445s00020020.1
ATGAGAAGATCACACCGTCAAATTCATCTCTCTCATGCTCTACTGTGCGCCATTCTCTGTTTCCTTTGGTCCATTGCCACGGTCTCACCAGAAACCGAGAAGGAGATTTTACTTCAATTCAAGGGTAGCATCACGGAGGATCCCCACAACAGCTTGAGTTCATGGGTTTCAAGTGGAAACCCTTGCCAAGGTTACAATGGNATTTTCTGTAACTCGGAAGGATTTGTGGAAAGAATCGTGCTTTGGAACACTAGCTTAGGTGGGGTGTTGTCACCGGCACTTTCCGGGTTGAAGAGGTTGAGGATATTGACATTGTTCGGGAATCGGTTCTCGGGNAACATTCCAGAAGGATATGCTGATCTTCACTCTTTGTGGAAGATCAATTTGAGCTCCAATGCGTTATCTGGTTCGATCCCGGAGTTCATTGGTGATTTGCCTAGCATTCGCTTTCTGGATTTGTCAAAGAATGGCTTCACTGGGGAGATACCTTGGGCTTTGTTTAGGTACTGCTACAAAACCAAGTTCGTTTCTCTTTCTCATAATAACCTTGCTGGTCCAATCCCTGCCTCGTTGGTGAATTGCTCCAACCTTGAAGGCTTTGATTTTTCTTTCAACAATCTTAGTGGTGTTGTCCCTTCGCGGCTTTGTGACATTCCAAGGTTATCCTATGTATCCCTGAGAGGCAATGCCTTGTCAGGGAGCGTGAATGAGCACATCTCTGCATGCCAAAGTCTAATGCATTTGGATTTTGGTAGTAATAGATTTACTGATTTGGCCCCTTTTAGCGTCCTTGGATTGCAGAATCTTACCTATTTCAATATATCCTATAATGGGTTTGAAGGACAAATTCCTGAGATCACTACCTGTAGTGAGAGATTAGAAATCTTTGATGCTTCAGGGAATGATTTGGATGGGGTGATTCCATCCAGCATAACTAGATGCAAGAACCTGAAGCTCTTGGCCTTGGAGTTGAATAGGCTGAAAGGGAGTATCCCAGTTGATATTCAGGAACTGCGAGGACTATTAGTTATCAAATTGGGTAACAATTCGATAGGTGGAACGATTCCCAAGGGTTTTGGCAACATTGAGCTTCTTGAATTGCTGGATTTAGGAAATCTAAACCTCGTTGGCGAAATTCCGGTTGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGATGTTTCTGGTAATAACTTGGAGGGAGAGATTCCTCAGGAACTTTACAAAATGACAAATCTGGAAGCCCTTGACCTACATCATAACCAGCTTAAGGGAAGCATCCCATCAAGCCTGGGAAACCTGTCAAGGATCCAATACTTAGATCTAGCACACAATTCACTTTCTGGTTCAATCCCTCCTTCCCTTGGATATTTGAAAAACTTGACACATTTTGATCTCTCATTCAACAACCTCTCTGGTGTCATTCCTGATGTTGCAACCATACAGCGTTTCGGTGCACCTGCATTTTCCAACAATCCTTTTCTCTGCGGTGCTCCTTTGGACACCCCTTGCTCAGCAAATGGAACTAGAGCATCACCTTCAGCTCCTGGGAAGACTAAAGTTCTCAGTGTCTCTGCAATTGTTGCGATTGTTGCTGCAGCTGTAATTCTTACTGGGGTTTGTTTGGTGACCATCATGAATATTAGGGCCCNGCGAAGAAAAAAAGATGATGATCAGATTATGATTGTTGAGAGCACACCTCTAGGATCATCAGAATCAAATGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAGTCTTTGATAGGTGGAGGATCAGTTGGTACGGTCTACAGAACTGATTTTGAAGGTGGCATCTCAATCGCGGTGAAGAAGCTTGAGACCATGGGAAGGATCAGAAATCAGGAGGAATTCGAACATGAAATCGGGCGACTAGGCAACCTTCAACACCCTAATTTAGTTGCCTTTCAAGGTTACTATTGGTCCTCTTCAATGCACCTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTATATGATAATCTACATGGGTCTGGCTATCCTGGAACCAGCACTAGTAGGGGCAATAGGGATTTGTATTGGTCTAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCATGACTGTCGTCCTCCGATCCTTCATCTCAACATTAAATCCTCCAACATACTCTTAGATGNCAGGTATGAAGCCAAGTTGTCTGATTATGGGTTAGGAAAGTTACTTCCCATTTTGGATAATTATGGCCTGACCAAGTTCCACAATGCTGTTGGATATGTTGCACCAGAGNTGGCTCAAAGCCTTAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTTGGGGTCATTCTTTTGGAGCTGGTTACTGGCAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTTCTGTGTGAATATGTAAGAGGNTTGTTGGAGACTGGCTCAGCTTCAAATTGCTTTGACAGGAATTTACTGGGCTTTGCTGAGAACGAATTGATTCAGGTCATGAGATTGGGGCTGATCTGTACTTCAGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTCGAGTCCATTAGAAATGGATGGAATCTCATTAACCACTAAGAGCTTTTCCATGCAACTCAGAATTGAAGTAATTGCTTCATTTGTAAAATTCTTCCAGGAGCGTTGGTATCAGACAGAGCATACTTGGAAGGAGAGGATGTTACTTGGGCATTTAAAACCGGGGAAAAAGCAGAGGACAAAAATTCTTTAGCATTCATTTTTATATTACCATTTTTTTATGTAACATTTGCAAATAAAAGGCATTTGTTTATTCCATCCATTGTTTCAAGTGTTTTCAAGGGGGAAAACAAGAACTGCCTATTATTCATTTCCAACCTTTTAAGCGTGACACCATAGAGAGGTTCGGTTTCTAACCTTTATTCATTTCCTCTACCTTTGCTTCGTTTTTTTGCCTCCAATATTGNCTTTCACCAAAGGACAATTTGTTTTAGCAAACCAACTTGCATCAATCCACGCTGAAGACTCTGCATTTTGGATTTGTGCATATACTGCTAACTTGATTGACTTAATACTCGGCCAACAGCCATGATGTCAGCTCTTTATGATCTTCCTCGCCGTGTAAGAGCACTTCATCAAAATCTACCCTCGAACAGTTTTTTGTNAATTATTACACTAAATATGTAATTCTTTAATATAAGATTATGAAATAAAAGCAAACGTAAAAAATCATTTCTTTGGTTTTTTTTGGGGGGGGGGGTGTTAAAACAGCTATCAGGCCCAGAACCAAATTGGGGTCTCGCATGGTGCTCCCCTTTGCTTTCTTTTCATACTTTTTTCTCACTGTGTAACTGTAAGGTGATTAAACTGATAGTAAGAGTGAAGCCGCTTCTTTAGGTCGAGATTAGTGATTGTTCCTTTGGTAATTGCACCTGAAGCCATTTCAGTACTAATTTGAGGACGGTAGAAATCATCTTGGACTACGAGGCCACGAATATTGTCCTAATGCATAGCCTTAAAAATTACAATTTACAATCTATCATTTTCAAACAACCCCTGCACATTGCCTACTACCAGACACCTAGTCATCCAACTGCCCTTTGATGACTGGTTATTCCTTCTGGGATGAAGCCGGCTTCACCACAAGAATAAAGAATCAATAAACCAACAAAATTTGCATAAATGATTGACGCCATATCAACCATNTGATTTTGTGGTCTCAGGAATTCTCCGAATCCGTTCCATTACCACAGGAATATCCTTTTCAGACAATGTAGCCAAGCAAAAACAGAACCATCCAGGTTCAATACAGTGACAAGAGGATCCCGGGGTAACATTGATCTTAGCTACATTCAGCAATCTATCCCAGAGCTCAAGCTCCCCCTTTTCACTGTAAGAGCGGATTAACCAACTCATGTCAGCCCAGCAACAAAAACCACCACTGCTCCTAGTGCACTCGATCCCAAACTGCTCCAATCCTGCCATAAATGCATCATACATTTTCCGCAGCCTCAGTTTGTTAGTCTCAATGAATTTTCGTATAAATCTTGTATCTGAAAGCATGGAGATAAGCAATTGCTGGGTTGGAGCAGAAACAGTTGAGAACCTTGTCAATTTGTTGGAAGCAGCCACCACATTCTCATTATAGGAGTAGATAACACCAACCTGGAAACCCGGAAAAGAGAGCTCATTTGATAAATCAAACACTATATGAACTCTGTCCCGATCATGATCTTCTGCTTCAATGATTTCTGCCATGCTCACAAACTCCTCGTTTCGATAAGCAGAGCCTGCAAATACTTCATTAGAGATTATGTGAATGTTCTTCTCTCTAGCAAAGTCCAGAAGATCAAGCAGTGTTTCCTGGCTTATCAATTTGCCAGCAGGATTTGAGGGGTTTGTTATTATGATTCCACGAACTTTTTGACCACGTATCTTTGCTTGGTTGAAGGCTCTTTCAAGTGCAGTTATGCTTAAATTGAAGTTATCAGCGCTGCGGCAGGGAACAGGTACTATATCCACCCCAGTTCGCCATTTTACATCCCCATCAAAGCTGCATGAATGTGTTCTAAAAGTATCATTTTTTTTGGGAAGGAAAGCGGGTAACAAAATGAAGACTTGGCAAATGGGAAAGAGATTGTTACCCAGGGCTATGAGGCGTGGGAACAAGGAATGCATTTCCATTATCTGCTAGGCAGAAGGTTAGAATTTCAATGGCAGGGGTGGCACCTGCAGTTAGCACCATATGTGAAGGGTTGAAGAAAACTGGCTTCTCCAGAACTTGAGACATGAAACCAGCCACAGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00445	149067	154038	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000445s00020020.1	PF08263.7	LRRNT_2	31	71	3.70E-10
Glyur000445s00020020.1	PF13516.1	LRR_6	242	258	1
Glyur000445s00020020.1	PF13855.1	LRR_8	411	471	3.30E-09
Glyur000445s00020020.1	PF00069.20	Pkinase	605	878	6.60E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.534
SRR1783600	control	35.501
SRR1783602	moderate drought stress	38.799
SRR1811619	moderate drought stress	35.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.113
DRR006520	Root Summer glycyrrhizin high producing strain	15.496
DRR006521	Root Winter glycyrrhizin high producing strain	3.835
DRR006522	Root Winter glycyrrhizin high producing strain	3.671
DRR006523	Root Summer glycyrrhizin low producing strain	18.705
DRR006524	Root Summer glycyrrhizin low producing strain	18.414
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.905
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.468

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.526
SRR2868004	Drought Stress (root)	7.128
SRR2967015	Control (root)	8.603

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.257
SRR9715740	Leaf	13.627
SRR9715741	Leaf	15.557
SRR9715739	Root	16.834
SRR9715742	Root	21.932
SRR9715743	Root	20.767

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.897
SRR8749028	MeJA induced 9h	1.559
SRR8749029	MeJA induced 9h	0.749
SRR8749030	Uninduced	1.196
SRR8749031	Uninduced	0.418
SRR8749032	Uninduced	0.346

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.874
SRR8400027	Control - Root	41.192