Gene detail

Gene detail information of Glyur000445s00020017

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22840.1	1.00E-109	Sodium Bile acid symporter family
NR	AFK35401.1	0	unknown [Lotus japonicus]
COG	YP_001964563.1	6.00E-41	cotransporter [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Swissprot	tr\|Q650U0\|BASS5_ORYSJ	9.00E-149	Probable sodium/metabolite cotransporter BASS5, chloroplastic (Precursor)
trEMBL	tr\|I3S559\|I3S559_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK35401.1}

Sequence

Transcript Sequence

>Glyur000445s00020017.1
GGTTACTCCATTTCGATTAAAAAAAANACAAACAAAACATGAATTCAATTTCAAGCAGAGTGAAGGAGGCGACTAATGTCAATTCCCGGCATCTCTCACTCTTGCGTCTTCGAAACCCCNCAATTTCAGTGCGATGCAGTAGGAGCAACACCAACAACATCTCGATTCGTTTGCATTCAAGCTTCCCGTTTTCCTTGCAAGACTGGCGCCCCAGGCTTCCTATCAAACGTGCATCGATGAACTCTTCCGAATCCGATTCCCAGACGGAAAATTCAAATCCCATTTTGGAGATTCTGAAGCAATCAAATTCATTTCTGCCCCCTGCACTCCTTGCTAGTACACTGCTAGCTGTAACCTTCCCACGTTCTTTAACATGGTTTACCAGCAGATACTATGCACCTGCACTAGGGTTTTTGATGTTTGCAGTTGGGGTTAATTCAAGTGAAAAGGACTTCCTTGAGGCATTTAATAGGCCAAAAGAAATTATCACTGGTTATTTTGGCCAGTTTGTTGTGAAGCCTCTTCTTGGATATCTGTTTTATATTATTTCAGTAACTGTTTTGGGTCTACCAACAGCANTAGGCGCGGGGATTGTGTTGGTGGCTTGTGTTAGTGGAGCCCAGCTCTCAAATTATGCTACTTTTCTAACAGATGCAAAAATGGCACCATTAAGCATAGTAATGACATCACTGTCCACAGCTTCTGCGGTTTTTGTCACACCATTCTTATTACTGTTGCTCATCGGGAAGAGACTGCCTGTAGATGTAAAAGGAATGGTGTTTAGCATTACACAGATTGTGGTGGCACCTATTGCAGTTGGCCTGCTTCTAAATCGCTTGTCTCCTCGTATTTGTAATGCTATTCGACCATTTTTGCCTCCACTATCCGTGTTGGTGGGAGCTATCTGTGCTGGGGCTCCACTCGCTATTAACATTGAGTCTATTAAATCCCCCTTAGGAGTTTCTATCTTGTTGCTTGTCCTTGCTTTTCATTTGTCAGCTTTTATAGCTGGTTATATCCTAAGTGGNTTCGTCTTCCGTGATTCTCCTGATTTGAAGGCACTGCAACGAACAATTTCCTTTGAGACAGGAATGCAAAGTAGCCTCCTTGCCCTGGCTCTTGCTAATAAGTTCTTCGAAGATCCAGTAGTGAACTGCAATGATGTCTTTGATGGGATTTACTCTTGTCCTGATTTGGACCAAAAGAGGAAAGAGCGACATAAAACACAGCACCTGAAAGAATGGAGCTCCAAGCTGCCTCTCAAATGTGCATCGCTGAACTCTTCGGGTTCCCTGATACCTGATCCGGTCCCGGTTCACTCTTACCCGACCCAGATGGTGAAGCAAAATTCAATGTCCATTTTGGAGATTCTGAAGCAATCAAATTCACTTCTGCCTTATGTAGTCCTTGCTAGCACACTGCTNGCTCTAATCCACCCACATTCTTTTACGTGGTTTACCAGCAGATACTATGCACCTGCACTGGGGTTTTTGATGTTTGCAGTCGGGGTTAATTCAAGTGAAAAGGACTTCCTTGAGGCATTTAATAGGCCAGCAGAAATTGCCACTGCTTATGTTGGCCAGTTTGTGGTGAAGCCTCTTCTTGGATATCTGCTTTGCATAATTTCAGTAAATGTATTTGGTCTACCAACAGCAATAGGCGCAGGAATTGTATTGCTGGCTTGTGTTAGTGGAGCCCAGCTCTCAAGTTATGCTACTTTTCTATCAGACCCACAAATGGCACCACTGAGCATAGTTATGACGTCACTGTCTACGGTTTCTGCTGTTTTTGTCACGCCACTCTTATTATTGCTGCTCATTGGGAAGAGACTGCCTGTAGATGTAAAAGGAATGGTGTTTAGCATTACACAGATTGTGCTGGTACCTATTACATTTGGTCTACTTCTAAATCGCTTCTTTCCTCATATTTGTAATGCTATTCGACCATTTTTGCCTCCACTATCAGTATCTGTGGCAGCTCTCTCTGCTGGAGCACCACTCGCTCTTAACATTGAGTCTGTTAAATCCCACTTTGGAGTTTCTATCTTTTTGCTGGCTGTTACTTTTCATTTGTCATCTTTTATAGCTGGTTATATCCTAAGTGGATTTGTCTTCCGTGATTCTCCTGATGCAAAGCCACTGCAGCGAACAATTTCCTTTGAGACAGGAATGCAAAGTAGCCTTCTTGCCCTGGCTCTTGCTAATAAGTTNTTTGAAGATCCAGTAGTGGGTATGCCTTCTGCAATATCTTCTCCGCTTATGTCTTTGATGGGATTTTCTCTTGTTCTGATTTGGTCGAAAAGAGGAAAGAGCAAGGAGGCAAAACACAGCACCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00445	131864	141743	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000445s00020017.1	PF01758.11	SBF	121	304	2.10E-37
Glyur000445s00020017.1	PF01758.11	SBF	480	662	3.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.477
SRR1783600	control	56.536
SRR1783602	moderate drought stress	58.993
SRR1811619	moderate drought stress	58.153

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.189
DRR006520	Root Summer glycyrrhizin high producing strain	22.254
DRR006521	Root Winter glycyrrhizin high producing strain	4.806
DRR006522	Root Winter glycyrrhizin high producing strain	4.970
DRR006523	Root Summer glycyrrhizin low producing strain	8.340
DRR006524	Root Summer glycyrrhizin low producing strain	8.410
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.270
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.310
SRR2868004	Drought Stress (root)	28.842
SRR2967015	Control (root)	24.173

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.375
SRR9715740	Leaf	6.349
SRR9715741	Leaf	6.318
SRR9715739	Root	20.715
SRR9715742	Root	21.267
SRR9715743	Root	20.505

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.021
SRR8749028	MeJA induced 9h	3.011
SRR8749029	MeJA induced 9h	1.965
SRR8749030	Uninduced	0.746
SRR8749031	Uninduced	0.675
SRR8749032	Uninduced	0.464

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.444
SRR8400027	Control - Root	123.469