Gene detail information of Glyur000445s00020016 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22830.1 | 8.00E-49 | |
| NR | XP_003611209.1 | 3.42E-91 | Ycf49-like protein [Medicago truncatula] |
| Swissprot | tr|P15811|YCF49_CYAPA | 2.00E-11 | Uncharacterized protein ycf49 |
| trEMBL | tr|G7KEW0|G7KEW0_MEDTR | 1.00E-91 | Ycf49-like protein {ECO:0000313|EMBL:AES94167.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00445 | 126263 | 130266 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000445s00020016.1 | PF10693.4 | DUF2499 | 108 | 197 | 8.50E-37 |
| Glyur000445s00020016.2 | PF10693.4 | DUF2499 | 62 | 134 | 2.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.398 |
| SRR1783600 | control | 4.575 |
| SRR1783602 | moderate drought stress | 2.835 |
| SRR1811619 | moderate drought stress | 2.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.964 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.907 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.698 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.369 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.443 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.340 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.742 |
| SRR2868004 | Drought Stress (root) | 0.676 |
| SRR2967015 | Control (root) | 0.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.659 |
| SRR9715740 | Leaf | 8.157 |
| SRR9715741 | Leaf | 4.350 |
| SRR9715739 | Root | 1.123 |
| SRR9715742 | Root | 1.457 |
| SRR9715743 | Root | 1.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.105 |
| SRR8749028 | MeJA induced 9h | 0.723 |
| SRR8749029 | MeJA induced 9h | 0.843 |
| SRR8749030 | Uninduced | 0.085 |
| SRR8749031 | Uninduced | 0.096 |
| SRR8749032 | Uninduced | 0.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.003 |
| SRR8400027 | Control - Root | 6.141 |