Gene detail information of Glyur000445s00020012 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45430.1 | 4.00E-54 | AT-hook motif nuclear-localized protein 22 |
| NR | XP_003538721.1 | 1.42E-126 | PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 2.00E-48 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|I1LGK4|I1LGK4_SOYBN | 5.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G03130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00445 | 108398 | 109390 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000445s00020012.1 | PF03479.10 | DUF296 | 123 | 238 | 6.80E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.546 |
| SRR1783600 | control | 5.891 |
| SRR1783602 | moderate drought stress | 3.632 |
| SRR1811619 | moderate drought stress | 3.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.185 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.948 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.975 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.876 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.654 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.180 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.898 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 112.593 |
| SRR2868004 | Drought Stress (root) | 140.832 |
| SRR2967015 | Control (root) | 111.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.322 |
| SRR9715740 | Leaf | 4.094 |
| SRR9715741 | Leaf | 6.070 |
| SRR9715739 | Root | 1.835 |
| SRR9715742 | Root | 7.740 |
| SRR9715743 | Root | 7.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.033 |
| SRR8749028 | MeJA induced 9h | 30.890 |
| SRR8749029 | MeJA induced 9h | 19.743 |
| SRR8749030 | Uninduced | 22.960 |
| SRR8749031 | Uninduced | 6.999 |
| SRR8749032 | Uninduced | 5.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.063 |
| SRR8400027 | Control - Root | 16.425 |