Gene detail information of Glyur000445s00020002 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32270.1 | 1.00E-38 | Ubiquitin-like superfamily protein |
| NR | XP_003550182.1 | 1.32E-115 | PREDICTED: uncharacterized protein LOC100820296 isoform X1 [Glycine max] |
| Swissprot | tr|Q84WS8|U1125_ARATH | 2.00E-13 | U11/U12 small nuclear ribonucleoprotein 25 kDa protein |
| trEMBL | tr|I1MWT0|I1MWT0_SOYBN | 5.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G32040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00445 | 47960 | 50859 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.892 |
| SRR1783600 | control | 10.067 |
| SRR1783602 | moderate drought stress | 10.298 |
| SRR1811619 | moderate drought stress | 13.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.797 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.686 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.191 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.577 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.800 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.969 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.180 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.377 |
| SRR2868004 | Drought Stress (root) | 18.887 |
| SRR2967015 | Control (root) | 19.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.634 |
| SRR9715740 | Leaf | 4.948 |
| SRR9715741 | Leaf | 4.992 |
| SRR9715739 | Root | 4.276 |
| SRR9715742 | Root | 8.151 |
| SRR9715743 | Root | 8.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.232 |
| SRR8749028 | MeJA induced 9h | 5.063 |
| SRR8749029 | MeJA induced 9h | 6.994 |
| SRR8749030 | Uninduced | 3.905 |
| SRR8749031 | Uninduced | 4.334 |
| SRR8749032 | Uninduced | 5.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.886 |
| SRR8400027 | Control - Root | 17.916 |