Gene detail

Gene detail information of Glyur000445s00020000.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32300.1	0	S-domain-2 5
NR	XP_003549282.2	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like isoform X1 [Glycine max]
COG	YP_001958461.1	2.00E-27	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q8RWZ5\|SD25_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (Precursor)
trEMBL	tr\|I1MWS6\|I1MWS6_SOYBN	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000445s00020000.1
ATGGGAAAACANTGGTCTTATTTCTTCAATGTTATGGATACCCTTTGGTTGTGTATCCTCCTTTTGTCTGAAACCGTTTTAGCTGGTGTTCAATGGGTTGACAAGGTCTCACCAGGATTTGAAGGCACTCAGATGAATTGGATTGACAGGGATGGAAAGTTCCTTGTGTCAAACAAGGGAGAATTTGGCTTTGGCTTTGTGACCACTGCAAATGACAACACGTTGTTTCTTCTTGGCGTGGTCCACATGGATAGTACCAAGGTGGTTTGGGTTGCAAATAGGGGACTTCCTGTTTCTAATTCTGATAAGTTTGTGTTTGATAAAGAGGGTAATGTGTTTTTACAAAAAGGAGGAACTGTGGTCTGGTCTACAGGTACAAGTGGCAAGGGAGTTTCTTCAATGGAATTGAAGGACAATGGAAATTTGGTCTTGCTTGGGAATGATAGTAGAGTGATTTGGCAGAGTTTCAACCATCCAACAGATACTTTATTGCCAATGCAAGACTTCGCTGAGGGAATGAAACTTATCAGTGAACCTGGTTCTCNTAACAACTTGACCTATGTTCTTGAGATTGAATCTGGAAATGTTATTCTTTCCGCTGCNGCGGGTTTACAAACTCCACAGCCTTATTGGTCTATGCAAAAGGAGAGCCGCAGAATCATCAATAGAAATGGTGATGTGGTAGCTTCAGCAACCATTGGTGGAAATTCCTGGAGGTTCTATGACAAGAATAAGTCCTTGTTGTGGCAATTTGTTTTTGCTGAAGATGATTCAGCTGCTGCAAATGCCACTTGGATTGCAGTTTTGGGAAGTGATGGCTTTCTCACTTTCTCCAATCTCCAAAGTGGAGGGTCAATTGGTGCCTCACCAATAAGAATACCACAAGATTCTTGCAGTACACCTGAACCTTGTGGTCCCTATAACATATGCAATGGTGACAAAAAGTGTAGCTGCCCTTCTGTTCTTAGCTCTAGTCCTAATTGCAAACCAGGGTTTGACTTTGTCTCTCCTTGTAACTCAAAAAAAAGCTCCATTGAGCTTCTGAAAGCTGATGATGGACTCAATTACTTTGCACTTGAGTTTCTCCCACCCTCTTCGAAAACCGATTTGATTGGTTGTCAAAGTTCTTGCAGTGAAAACTGTTCATGCCTTGCTATGTTCTTCCACAACAGTTCAGGGAATTGTTTCCTGTTAGACAGGATTGGAAGCTTTGAGAAAACTGATAAGGATTCTGGTTTTGTCTCTTACATTAAGGTCTCCAGAGATGGAGGCACAGGAAACAGTGGAAACAACAATATGCAGACGATAGTTGTTGTGATCATTGTCATAATAACTTTNCTTGTCATTTCTGGCATGCTCTTTGTGGGGCATAGATGCTACAAGAAAGAGCAAAACTTGCCAGATTCTCCCCAAGAGAACTCAGAAGAGGACAATTTCTTGGAGAATCTAACCAGCATGCCAATCCGTTACAGCTACAATGATCTAGAAACTGCAACAAGTAGCTTCTCAGTGAAGCTTGGGCAAGGGGGTTTTGGCTCAGTTTATAAAGGAGTTCTACCAGATGGGACTCAACTAGCTGTGAAGAAGTTGGAAGGCATNGGCCAAGGGAAGAAAGAGTTCAGGGCTGAAGTTAGCATCATTGGAAGCATTCATCACCACCATTTGGTAAGGCTTAAAGGATTCTGTGCTGAAGGGTCTCATAGGCTTCTTGCTTATGAGTATATGGCCAATGGCTCATTGGATAAATGGATATTCAAAAAAGGAAAAGGAGAATTCACATTGGAGTGGGATACAAGGTTCAATATAGCACTAGGAACAGCAAAAGGACTTGCTTACCTCCATGAAGATTGTNACTCGAAGATTGTTCACTGTGATATTAAACCAGAAAATGTGCTTCTAGATGACAATTTTCAAGCCAAGGTCTCAGATTTTGGTCTTGCTAAGCTCATGACACGTGAACAAAGCCATGTTTTCACAACACTAAGGGGCACTAGGGGTTACCTTGCACCAGAGTGGATCACAAACTATGCCATCTCAGAGAAAAGTGATGTTTATAGCTACGGGATGGTGTTGCTAGAGATCATTGGAGGGAGAAAAAACTATGACCCCAATGAAACATCAGAGAAAACCCACTTCCCATCTTTTGCTTTCAAGATGATGGAAGAAGGGAAGGTGAAAGATGTGCTTGATTCTGAGCTGCAGAAAACACATGAAGAAAGTGAATATGTGAGGGTTCACACTGCCTTGAAAGTTGCATTGTGGTGCATACAAGAAGACATGTCTCTAAGGCCTTCAATGACCAAAGTTGTTCAAATGCTTGAGGGTCTATGTACTGTTCCTAAGCCACCAATTTGTTCTCAATTGGGTTATTCTCGGTTTGACTCAACTTTCCTCAGACCCACAAGTGGGAATGGCACTTCTTCAGGACCACCAGAATATAATAGNGATGCCAACCTCTCTGCTGTTCAGCTTTCAGGGCCAAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00445	34939	37425	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000445s00020000.1	PF01453.19	B_lectin	86	171	5.00E-24
Glyur000445s00020000.1	PF00069.20	Pkinase	504	771	1.80E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.857
SRR1783600	control	2.886
SRR1783602	moderate drought stress	4.539
SRR1811619	moderate drought stress	4.493

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.914
DRR006520	Root Summer glycyrrhizin high producing strain	1.858
DRR006521	Root Winter glycyrrhizin high producing strain	0.846
DRR006522	Root Winter glycyrrhizin high producing strain	0.788
DRR006523	Root Summer glycyrrhizin low producing strain	0.977
DRR006524	Root Summer glycyrrhizin low producing strain	1.018
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.179
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.297
SRR2868004	Drought Stress (root)	7.631
SRR2967015	Control (root)	5.827

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.311
SRR9715740	Leaf	9.252
SRR9715741	Leaf	8.389
SRR9715739	Root	1.341
SRR9715742	Root	3.098
SRR9715743	Root	3.465

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.235
SRR8749028	MeJA induced 9h	3.202
SRR8749029	MeJA induced 9h	1.056
SRR8749030	Uninduced	1.521
SRR8749031	Uninduced	0.674
SRR8749032	Uninduced	0.932

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.768
SRR8400027	Control - Root	3.752