Gene detail information of Glyur000445s00019999 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32330.3 | 2.00E-54 | TPX2 (targeting protein for Xklp2) protein family |
| NR | XP_004498741.1 | 0 | PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q84ZT9|WVD2_ARATH | 1.00E-23 | Protein WAVE-DAMPENED 2 |
| trEMBL | tr|K7MN33|K7MN33_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G31990.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00445 | 24234 | 29636 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000445s00019999.1 | PF06886.6 | TPX2 | 236 | 292 | 1.20E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.630 |
| SRR1783600 | control | 53.521 |
| SRR1783602 | moderate drought stress | 79.261 |
| SRR1811619 | moderate drought stress | 78.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 53.217 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.582 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.021 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 71.566 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 72.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.496 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.623 |
| SRR2868004 | Drought Stress (root) | 65.616 |
| SRR2967015 | Control (root) | 67.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.721 |
| SRR9715740 | Leaf | 13.865 |
| SRR9715741 | Leaf | 15.187 |
| SRR9715739 | Root | 7.971 |
| SRR9715742 | Root | 38.115 |
| SRR9715743 | Root | 33.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 79.328 |
| SRR8749028 | MeJA induced 9h | 58.400 |
| SRR8749029 | MeJA induced 9h | 47.710 |
| SRR8749030 | Uninduced | 28.965 |
| SRR8749031 | Uninduced | 10.180 |
| SRR8749032 | Uninduced | 10.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 58.463 |
| SRR8400027 | Control - Root | 59.056 |