Gene detail information of Glyur000445s00019997.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25490.1 | 4.00E-116 | EIN3-binding F box protein 1 |
| NR | XP_004498740.1 | 0 | PREDICTED: EIN3-binding F-box protein 1-like [Cicer arietinum] |
| COG | YP_008954.1 | 6.00E-17 | hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9SKK0|EBF1_ARATH | 4.00E-137 | EIN3-binding F-box protein 1 |
| trEMBL | tr|G7I706|G7I706_MEDTR | 0 | EIN3-binding F-box-like protein {ECO:0000313|EMBL:AES59017.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00445 | 16402 | 19161 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000445s00019997.1 | PF00646.28 | F-box | 114 | 154 | 6.20E-08 |
| Glyur000445s00019997.1 | PF13516.1 | LRR_6 | 264 | 287 | 0.21 |
| Glyur000445s00019997.1 | PF13516.1 | LRR_6 | 290 | 314 | 0.00028 |
| Glyur000445s00019997.1 | PF13516.1 | LRR_6 | 452 | 474 | 0.086 |
| Glyur000445s00019997.1 | PF13516.1 | LRR_6 | 476 | 498 | 0.017 |
| Glyur000445s00019997.1 | PF00560.28 | LRR_1 | 504 | 526 | 1.2 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.527 |
| SRR1783600 | control | 23.009 |
| SRR1783602 | moderate drought stress | 39.771 |
| SRR1811619 | moderate drought stress | 39.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.315 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.792 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.637 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.434 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.880 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.086 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.967 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.736 |
| SRR2868004 | Drought Stress (root) | 71.872 |
| SRR2967015 | Control (root) | 36.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.181 |
| SRR9715740 | Leaf | 14.541 |
| SRR9715741 | Leaf | 37.231 |
| SRR9715739 | Root | 49.907 |
| SRR9715742 | Root | 114.418 |
| SRR9715743 | Root | 98.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.826 |
| SRR8749028 | MeJA induced 9h | 18.212 |
| SRR8749029 | MeJA induced 9h | 2.469 |
| SRR8749030 | Uninduced | 2.516 |
| SRR8749031 | Uninduced | 4.887 |
| SRR8749032 | Uninduced | 4.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 54.521 |
| SRR8400027 | Control - Root | 58.429 |