Gene detail

Gene detail information of Glyur000444s00022241

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52100.1	9.00E-107	Dihydrodipicolinate reductase, bacterial/plant
NR	XP_003592305.1	1.11E-170	Dihydrodipicolinate reductase [Medicago truncatula]
COG	YP_007149563.1	2.00E-55	dihydrodipicolinate reductase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q9FJ82\|DAPB3_ARATH	3.00E-133	Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic (Precursor)
trEMBL	tr\|G7IAQ3\|G7IAQ3_MEDTR	4.00E-171	Dihydrodipicolinate reductase {ECO:0000313\|EMBL:AES62556.1}

Sequence

Transcript Sequence

>Glyur000444s00022241.1
AAAACATTGGCCATCTTAAGCTATATTATATATGGTCACAAAATATATAAGGCTTATCTTCTTTTGGGCACAGAGGCTTGAGCAGCTATGGTAGCCCTAAACTGCCAGTTTCATTCCACCAACTACTTGAATCCTAAGAAGGTCAAAAGCAGAAGCAAGCATTTCATTTCCTGCTCAGCGCAGCCTACACAGAGCAACACAAAGGTTGTGATAAATGGAGCAGCCAAGGAAATAGGAAGAGCAGCAGTAGTAGCTGTGACTAAGGCCAGAGGAATGGAGGTAGCTGGAGCAGTGGATACTTACCATGTTGGGGAAGATATTGGAAAGGTATGTGGCATGGAAGAGCCCCTTGAAATACCCATACTAAATGACCTTACTATGGTCTTGGGCTCTATATCTCAGTCCAAGGCAACAGCAGTTGTAGTTGATTTCACTGACCCTTCTTCAGTATATGACAATGTAAAACAGGCAACAGCATTTGGCATGAGAAGCGTCGTGTACGTGCCCCGAATCAAACTAGACACGGTAGCTGCATTATCTGCGTTCTGCGAGAAGGCCAGCATGGGTGTCTTGGTTGCACCGACTCTTTCCATAGGATCAATATTATTGCAACAAGCTGCGATTTCAGCTTCTTTCCATTACAGAAACGTGGAAATTGTGGAATCCAGGGCTAATGCAAATGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCTAACCTTGGTCAAGTCTANAACAGAGAAGACCCTTCAACAGATGTCCTGGTTTACTCCATTAAGCATGATATCACAGATGTGCAGTGTCTCATGCCAGGCTTGCTGTTAGCCATTAGAAAAGTAGTGCGCCTCAAGAATTTGGTATATGGCTTGGAGAAGTTTATGTGACTATACTCTACCTCTTCAATCTCCTTGTCAAGAACTTTTTTACCTTGGACTTAAACACAAAAGGACTGTCCACAAACATCAAAGAGAAGGGAAACAGAACCTCCCAAATTGCTTTCTAGCGGCCCATTTGTTCAATCACAACATTTGAACTGTGATTCGATTATTTTGTAAGGATTGTTTTGGATATCCAATTAGAATTCAGACCTCATGATACAGCATCGGATTTAAGACCAGGCAAAAAAAAAAGTAAGCTAAATTCGTCTAATGGAATTCTTTTCCAAAAAAGATGGATTATGAAGTCGTATTTTTTTTTTCTTGACTTAAAAAAAAGTCGTGTTTTTTAAGGACGAATGCTGAGATTTACTTATGATCCAAGGCTTCGAGGCTTAACATGACTCTTAGGAAGGTGCTTGCTAATAATAATACCTACTTCTTCCAAATTGGTGAACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00444	137660	141586	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009089 lysine biosynthetic process via diaminopimelate

GO:0055114 oxidation-reduction process

molecular_function
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000444s00022241.1	PF01113.15	DapB_N	38	165	9.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.027
SRR1783600	control	0.027
SRR1783602	moderate drought stress	0.083
SRR1811619	moderate drought stress	0.084

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.039
DRR006520	Root Summer glycyrrhizin high producing strain	0.059
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.353
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.083

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.560
SRR2868004	Drought Stress (root)	2.227
SRR2967015	Control (root)	1.330

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.030
SRR9715740	Leaf	35.910
SRR9715741	Leaf	19.699
SRR9715739	Root	0.000
SRR9715742	Root	0.015
SRR9715743	Root	0.074

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.300
SRR8749028	MeJA induced 9h	1.101
SRR8749029	MeJA induced 9h	0.390
SRR8749030	Uninduced	1.202
SRR8749031	Uninduced	0.465
SRR8749032	Uninduced	0.474

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.611
SRR8400027	Control - Root	0.386