Gene detail information of Glyur000444s00022239 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61060.1 | 3.00E-98 | phloem protein 2-A13 |
| NR | XP_003556087.1 | 0 | PREDICTED: F-box protein PP2-A13-like [Glycine max] |
| Swissprot | tr|Q9LEX0|P2A13_ARATH | 2.00E-122 | F-box protein PP2-A13 |
| trEMBL | tr|I1NGQ3|I1NGQ3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G29490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00444 | 122965 | 126218 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000444s00022239.1 | PF14299.1 | PP2 | 123 | 283 | 1.20E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.902 |
| SRR1783600 | control | 5.895 |
| SRR1783602 | moderate drought stress | 7.248 |
| SRR1811619 | moderate drought stress | 7.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.430 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.537 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.172 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.846 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.370 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.283 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.695 |
| SRR2868004 | Drought Stress (root) | 19.668 |
| SRR2967015 | Control (root) | 21.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.709 |
| SRR9715740 | Leaf | 21.063 |
| SRR9715741 | Leaf | 16.719 |
| SRR9715739 | Root | 5.111 |
| SRR9715742 | Root | 12.784 |
| SRR9715743 | Root | 10.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.202 |
| SRR8749028 | MeJA induced 9h | 21.705 |
| SRR8749029 | MeJA induced 9h | 10.848 |
| SRR8749030 | Uninduced | 7.700 |
| SRR8749031 | Uninduced | 4.895 |
| SRR8749032 | Uninduced | 8.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.474 |
| SRR8400027 | Control - Root | 20.498 |