Gene detail information of Glyur000444s00022233 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62070.1 | 1.00E-32 | IQ-domain 23 |
| NR | XP_003592300.1 | 0 | hypothetical protein MTR_1g101330 [Medicago truncatula] |
| Swissprot | tr|Q8L4D8|IQD31_ARATH | 5.00E-15 | Protein IQ-DOMAIN 31 |
| trEMBL | tr|G7IAP8|G7IAP8_MEDTR | 0 | Calmodulin-binding protein {ECO:0000313|EMBL:AES62551.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00444 | 65763 | 70865 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000444s00022233.1 | PF00612.22 | IQ | 126 | 144 | 8.90E-06 |
| Glyur000444s00022233.1 | PF00612.22 | IQ | 147 | 164 | 0.01 |
| Glyur000444s00022233.1 | PF13178.1 | DUF4005 | 349 | 432 | 1.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 109.169 |
| SRR1783600 | control | 109.940 |
| SRR1783602 | moderate drought stress | 86.620 |
| SRR1811619 | moderate drought stress | 86.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 91.142 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 90.598 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.237 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.305 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 76.010 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 76.527 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.121 |
| SRR2868004 | Drought Stress (root) | 28.669 |
| SRR2967015 | Control (root) | 41.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.291 |
| SRR9715740 | Leaf | 59.643 |
| SRR9715741 | Leaf | 40.601 |
| SRR9715739 | Root | 63.353 |
| SRR9715742 | Root | 72.147 |
| SRR9715743 | Root | 66.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.336 |
| SRR8749028 | MeJA induced 9h | 4.068 |
| SRR8749029 | MeJA induced 9h | 3.998 |
| SRR8749030 | Uninduced | 4.019 |
| SRR8749031 | Uninduced | 2.424 |
| SRR8749032 | Uninduced | 4.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 118.529 |
| SRR8400027 | Control - Root | 117.065 |