Gene detail

Gene detail information of Glyur000444s00022231

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29050.1	3.00E-79	RHOMBOID-like 1
NR	XP_007143375.1	0	hypothetical protein PHAVU_007G067300g [Phaseolus vulgaris]
COG	YP_002335161.1	1.00E-25	integral membrane protein, Rhomboid family [Thermosipho africanus TCF52B]
trEMBL	tr\|V7BC17\|V7BC17_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15369.1}

Sequence

Transcript Sequence

>Glyur000444s00022231.1
CCGGCCGCAATCCAGTGCTGCCGCTACCACACAACACCCCACAAAACGACCCAATCAAAACCAACCACGTCATCGGTCAAGTCAAACTCCCTTGACAATTTTCGTGGGTCGTAAGTGTTTCAAAGGTTGTTGATTTTTGGTGTTCTAATAACTGCGGCAGTTAGTAACACGACACACAGTGAAAAATGAAAATGGCTCACCCCACTACCTTCTCTGTGATCCCTCTCTCATTTAAACCCACTTCACCAACTCCACCTCTTCCTTCGCTATAAGGCACCGTTTTTCGGAATAAAGTTTGATACTTTGATATTGGGTGTTTTTTTATCTTAGAGAGAGAGGAATTATGGCTAGGAGAGATCTTGAAAGTGGTGTTGGGGGGACCAAGAACAGAGCAGAGGGGAACAACAACTACTCTGCTGCTGCAGCAGCATCATCCTATGTTTATGATCCAGAGACCCATTGGACTTCATGGCTTGTGCCTCTGTTTGTGGTCGCTAATATTGCTGTCTTCGTTGTGTCCATGTACATCAACAATTGTCCCAAGCACAATTTCGGCTTCCAAGGTGACTGTGTCGCCAGGTTCCTTGGCAGGTTCTCCTTCCAGCCTCTAAGGGAGAACCCATTGCTTGGCCCTTCTTCCTCAACATTAACCAAGATGGGAGCTCTTCGGTGGGATAATGTCGTGAACGGCCATCAGGGATGGAGACTTGTCACTTGCATTTGGTTGCATGCTGGAGTTATTCACTTGGTAGCAAACATGTTGAGCCTGGTCTTCATCGGCATTCGCCTTGAACAGCAATTTGGATTTCTGAGGATNGGAATCATATATCTGTTGTCTGGATTTGGTGGGAGTGTACTGTCTTCTCTTTTTATCAGAAACAACATCTCTGTTGGTGCTTCTGGTGCTCTTTTTGGACTCCTTGGAGCAATGCTGTCAGAACTTATCACAAACTGGACTATATATTCCAATAAAGCAATGGCTTTGCTCACCCTTCTAGTTATCATTGTCATCAACCTTGCCATTGGCATTTTACCACACGTTGATAATTTTGCTCACATTGGGGGATTTGTGGTGGGATTTCTCCTTGGTTTCATTTTGCTGCCGCGTCCCCAGTTCGGGTGGCTAGAGCAGCGACGCCTTCCTGCTGGTGTTCACCTGAAGTCAAAATACAAGCCTTACCAATATGTTCTATGGATTGTCTCTCTAGTTCTTTTGATTGCTGGGCTATCGATTGCATTGGTGATGCTGTTCCGGGGTGAGAATGGGTATGATCACTGCCATTGGTGTCATTACCTATCATGTGTACCAACTTCTAAATGGAAATGCGACAATGACACTTAAACAAGAGGGCATATGGTCTTCACTAGGAGTTTCTTTTCTTGTATGTATAGCCATAGCTCTTAGAAACTGAGTTTTTATGTCTTATTTCGTCTGTTTGTTTTAATAATTGGTCTGTCTTTGTGGATTTATATATACTTCTTTTCAAAAAAGAAAAAAAATATACATAGTATATATAATGAAATTTATTTGTATATGGATTTATTTCCATCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00444	59138	62342	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000444s00022231.1	PF01694.17	Rhomboid	114	257	1.60E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.547
SRR1783600	control	8.634
SRR1783602	moderate drought stress	6.044
SRR1811619	moderate drought stress	5.989

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.932
DRR006520	Root Summer glycyrrhizin high producing strain	56.672
DRR006521	Root Winter glycyrrhizin high producing strain	22.576
DRR006522	Root Winter glycyrrhizin high producing strain	21.993
DRR006523	Root Summer glycyrrhizin low producing strain	159.607
DRR006524	Root Summer glycyrrhizin low producing strain	160.707
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.203
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.974

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.994
SRR2868004	Drought Stress (root)	44.248
SRR2967015	Control (root)	43.329

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.298
SRR9715740	Leaf	39.766
SRR9715741	Leaf	43.977
SRR9715739	Root	78.255
SRR9715742	Root	145.536
SRR9715743	Root	127.374

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.430
SRR8749028	MeJA induced 9h	7.360
SRR8749029	MeJA induced 9h	9.096
SRR8749030	Uninduced	2.248
SRR8749031	Uninduced	0.497
SRR8749032	Uninduced	0.640

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.014
SRR8400027	Control - Root	70.608