Gene detail

Gene detail information of Glyur000443s00016866.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G74040.1	2-isopropylmalate synthase 1
NR	XP_004497478.1	PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cicer arietinum]
COG	YP_004172963.1	2-isopropylmalate synthase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q9C550\|LEU12_ARATH	2-isopropylmalate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|I1NJA5\|I1NJA5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G38950.3}

Sequence

Transcript Sequence

>Glyur000443s00016866.1
ATGGCCACCACCGCGATCCGCAGCCCCGTCGTCGCCCCTTCCACCACCACCACCACCCGTCTTTCCTCTCCCCACAACGACGGCGTCCTCCTCCGCCTCCATTTCCCCCAAACCTCAAAACGCCGCCACCAGTTCGCGATTTCGTGCTCCCAATCGGAACGGCGTCGTCCCCCTTACATCCCCAACCACATCCCCGACCCTTCGTACGTGCGCATCTTTGACACCACCCTCCGCGACGGCGAGCAGTCCCCTGGAGCTTCCATGACCTCCAAGGAGAAACTCGACATCGCGCGCCAGCTCGCGAAGCTCGGCGTCGACATCATCGAGGCCGGCTTCCCCGCCGCCTCCAAGGACGACTTCGAGGCCGTCAAGATGATCGCCACCGAGGTCGGGAACGCCGTCGATGACACCGGCTACGTTCCCGTCATCTGTGGCCTCTCTAGGTGCAACGAGAAGGACATTCGAACCGCGTGGGAGGCGGTTAAGCATGCCAAGAGGCCGAGGGTTCACACTTTCATTGCCACCAGCGGCATCCACATGCAGTACAAGCTCAGAATGTCCAAGGAAGAGGTCATTGACAAAGCCCGCTCTATGGTTATTAAGGCTGGGGCCACAACGCTCAACATTCCTGACACTGTTGGCATAACCATGCCGAGTGAATTTGCGAACCTGATTGCTGATATAAAAGCTAATACTCCGGGAATTGAAAATGTTATCATTTCCACCCACTGTCAGAATGATCTTGGGCTTTCTACTGCAAACACCATTGAGGGTGCACGTGCTGGTGCAAGGCAGCTGGAAGTAACAATTAATGGGATCGGTGAAAGGGCTGGAAATGCCTCATTGGAAGAGGTTGTGATGGCCCTGAAATGCGGAGGACATGTCTTTGACAACCTGTACACTGGAATTAATACAAAGCACATCTATATGACAAGCAGGATGGTTGAGGAGTACTCTGGTTTGCAGTTACAGCCACACAAGGCTCTTGTAGGGGCCAATGCCTTTGCTCATGAAAGTGGCATACATCAGGATGGAATGCTAAAACACAAAGGTACNTATGAAATAATATCTCCTGAGGACATTGGGCTTGAAAGAACCCATGAAGCTGGCATTGTACTGGGGAAGCTTAGTGGACGCCATGCTTTGAGAAAGCGCCTTGAAGAGCTTGGTTATGAACTTAAAGAGGACCAAGTTGAGAATTTATTTTGGCGTTTCAAAGCTGTGGCTGAGCAAAAAAAGAGGATGACTGATGCTGACCTCAGAGCATTGGTATCGGATGAAGTGACTTGTGGAACTCTGGGTCTTTCAACAGCAACTGTCAAACTTGTTAGTAGTGATGGTAGCATGCAAGTTGCTTGCTCTGTTGGTACAGGACCAGTGGATTCGGCTTACAAGGCTGTTGATATGATAGTGAAGGAACCTGTAACTCTTCTCGAGTACTCAATGAATGCTGTCACTGAAGGCATTGATGCAATTGCCACTACCCGAGTTGTAATTCGTGGGGAAAAGAATCATACATCTACTCATGCTTTAACTGGAGAAACTGTTCACCGAACTTTTAGTGGGACCGGAGCAGGAATGGATGTTGTTGTTTCCAGTGTCAAGGCCTATATTGCTGCAATAAACAAGATGTTGGGTTTCAAGGAAACATATTCATCAGCTGAAAAAATCCCCATTTCTGCATCAAAGAGTTGATAATTCGTGTTACTGCTTTGGTCACAGCTGCCTGTAATTTCTTGTTAACTGNGCCAAGAGGAAGAGAATGCTAAAGCAGCATCCTTACCTTTCTCAAGTTTTCGTGTTAAGGGATTGTGCTTGTATCTTAACGTGAATTTATTTTTTTTTGCACTNGTAATTTATCGATTCCCAAGTAGCCAAGCAACGAATGTAATTTTAGTCCGTTTTAAATATTTTGACTACACCTTTCATTTTTTAGGGTGCCTATTGGAAGTTATAAATGTGCTTTAGTAATACNCCTATTGTTGGAGACTTGGGAGTGGGATTTTTTGTTTTTTATTTCTCTCTTTGAGAAGTAAAATCATGCTCAACGAGGAATCAGGATGATTGCTATTAGCCTTGTTTAGAAGCATGGTAAACGAGGATTGAAGCTGAATTAAATTAGCATTAATTTTGCAGAATTAATCTATGCATTTCTTGGATGCTATTCATCCTCATTTTCAACGCCGATGCCTGAGCTTCTTGGATGAATCGAGTTTCATTGGGTCGATGCAGTAGGCTTGAAAATATTGTCCATCAATGCAGTAGGCTTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00443	154282	160560	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01649	leuA	EC:2.3.3.13	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Pyruvate metabolism	map00620
			Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

biological_process

GO:0009098 leucine biosynthetic process

GO:0019752 carboxylic acid metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0003852 2-isopropylmalate synthase activity

GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000443s00016866.1	PF00682.14	HMGL-like	78	200	3.50E-30
Glyur000443s00016866.1	PF08502.5	LeuA_dimer	422	545	7.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.848
SRR1783600	control	24.314
SRR1783602	moderate drought stress	30.449
SRR1811619	moderate drought stress	30.037

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.976
DRR006520	Root Summer glycyrrhizin high producing strain	39.845
DRR006521	Root Winter glycyrrhizin high producing strain	43.594
DRR006522	Root Winter glycyrrhizin high producing strain	42.114
DRR006523	Root Summer glycyrrhizin low producing strain	46.551
DRR006524	Root Summer glycyrrhizin low producing strain	46.451
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.964
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.175

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.123
SRR2868004	Drought Stress (root)	33.259
SRR2967015	Control (root)	38.403

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.097
SRR9715740	Leaf	33.230
SRR9715741	Leaf	30.057
SRR9715739	Root	21.511
SRR9715742	Root	25.893
SRR9715743	Root	26.935

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.244
SRR8749028	MeJA induced 9h	30.087
SRR8749029	MeJA induced 9h	22.999
SRR8749030	Uninduced	14.655
SRR8749031	Uninduced	10.816
SRR8749032	Uninduced	12.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.035
SRR8400027	Control - Root	32.746