Gene detail information of Glyur000443s00016860 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31600.1 | 8.00E-41 | |
| NR | XP_006372918.1 | 4.70E-77 | hypothetical protein POPTR_0017s06230g [Populus trichocarpa] |
| trEMBL | tr|U5FIC3|U5FIC3_POPTR | 2.00E-77 | Uncharacterized protein {ECO:0000313|EMBL:ERP50715.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00443 | 106134 | 110580 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000443s00016860.1 | PF13891.1 | zf-C3Hc3H | 97 | 163 | 4.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.901 |
| SRR1783600 | control | 14.971 |
| SRR1783602 | moderate drought stress | 18.695 |
| SRR1811619 | moderate drought stress | 17.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.623 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.875 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.130 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.874 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.774 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.027 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.630 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.766 |
| SRR2868004 | Drought Stress (root) | 48.666 |
| SRR2967015 | Control (root) | 38.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 71.435 |
| SRR9715740 | Leaf | 63.388 |
| SRR9715741 | Leaf | 63.105 |
| SRR9715739 | Root | 11.568 |
| SRR9715742 | Root | 17.289 |
| SRR9715743 | Root | 14.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.570 |
| SRR8749028 | MeJA induced 9h | 8.720 |
| SRR8749029 | MeJA induced 9h | 9.517 |
| SRR8749030 | Uninduced | 6.143 |
| SRR8749031 | Uninduced | 3.168 |
| SRR8749032 | Uninduced | 5.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 68.144 |
| SRR8400027 | Control - Root | 52.284 |