Gene detail information of Glyur000443s00016859 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31560.2 | 8.00E-30 | Protein of unknown function (DUF1685) |
| NR | XP_002529747.1 | 7.62E-42 | conserved hypothetical protein [Ricinus communis] |
| trEMBL | tr|B9SUS8|B9SUS8_RICCO | 3.00E-42 | Putative uncharacterized protein {ECO:0000313|EMBL:EEF32613.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00443 | 106015 | 109468 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000443s00016859.1 | PF07939.6 | DUF1685 | 42 | 102 | 5.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.285 |
| SRR1783600 | control | 8.382 |
| SRR1783602 | moderate drought stress | 9.580 |
| SRR1811619 | moderate drought stress | 9.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.394 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.476 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.440 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.253 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.604 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.589 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.768 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.281 |
| SRR2868004 | Drought Stress (root) | 23.189 |
| SRR2967015 | Control (root) | 17.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.810 |
| SRR9715740 | Leaf | 26.769 |
| SRR9715741 | Leaf | 24.225 |
| SRR9715739 | Root | 4.083 |
| SRR9715742 | Root | 6.020 |
| SRR9715743 | Root | 5.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.753 |
| SRR8749028 | MeJA induced 9h | 3.349 |
| SRR8749029 | MeJA induced 9h | 3.415 |
| SRR8749030 | Uninduced | 1.929 |
| SRR8749031 | Uninduced | 0.861 |
| SRR8749032 | Uninduced | 3.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.618 |
| SRR8400027 | Control - Root | 23.669 |