Gene detail

Gene detail information of Glyur000443s00016857

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43330.1	1.00E-164	inositol transporter 1
NR	XP_003592843.1	0	hypothetical protein MTR_1g116660 [Medicago truncatula]
COG	YP_003405196.1	2.00E-86	sugar transporter [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q8VZR6\|INT1_ARATH	0	Inositol transporter 1
trEMBL	tr\|G7IB08\|G7IB08_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:AES63094.1}

Sequence

Transcript Sequence

>Glyur000443s00016857.1
CCCTACATCGTCGGTATCACTTTCGCCGCCCGGCATTGGGTGGGTCTTCTCTTCGGCTACGACACCGGTGTGATCTCTGGCGCCCTTCTCTATATAAAAGAGGACTTTGCACTGGTCAGGGAACAGCAGCTTCATCCAGGTCCCTTAATTAATTTGCAGGAACTAATAGTTGGGATGGCGTTGGTGGGTGCAATATTCGGTGCGGCCGTGGGAGGTGTGATCAACGATGCGTTGGGGCGTAAGACAGCCACCATTATCGCAGACATATGCTTTGCGGCGGGATCAGCCATAATGGCCGCCGCACCAAACCCTTACGTCATCATTGCTGGTCGCTTTCTGGGCTGGGCGTCGCGCGCCGCCTCCGTCACTGCCCCCGTCTACATTGCAGAGGCATCTCCCACCGAGATCAGGGGAGGGTTGGTCAGTGCCAATACCCTCATGGGTTACTGGTGGACAGTTCCTTTCCTTTGTCGTCAATTACGGCCTCACCAGAGTTCCTGGGACATGGCGATGGATGCTTGGACTTGCGGGTACGCCGGCTGTCGTTCAGTTCTTTCTCATGCCTTTCTCCCCGAGTCCCCTAGGTGGCTTTACATGAAGAATAGGAAAGTAGAAGCCATCAGTGTGCTGTCCAAGATCTACTCATCGCCGCGGTTGGAGGACGAGATTGAGATTCTGGAGACTCACATGGAGGAAGAGCGGAAGAAACAGGTCAAAGTCAACTACGGCGACGTCTTCAGATTGAAGGAAATCAGGCTGGCATTCATCTGTGGTGCGGGACTGCAGGCATTCCAGCAGTTTGCAGGGATAAGCATCATAATATGGCTGGCTTCAAATCAAACCAAGCCGCTCTGTTCCTCCTCCCTCATCGTTTCTGGCATGAATGCGGCCGCAACAGTTCTGGGCATTTACCTCATTGACCATTCGGGGAGGAAAAAGCTGGCACTTGGTAGTTTATCGGGTGTGATTGCATCTTTGGTCATCCTCTCTGCATCATGCTATGTCATGGGTGAAGGCGGCAACACAAAACCACTACTTGGGTGGCTTGCAATTTTGGGTCTGGCTCTCTACATTGCTTTCTTTGCACCCGGAATGGGCCCTGTGCCTTGGACCGTGAACTCCGAGATTTACCCTGAAGAATATAGGGGCTTGTGTGGTGGCATGTCGGCAACTGTGAACTGGATTTGCAGCGTCATCATGTCCACCAGCTTCCTCTCGGTTGTTGATGCCATTGGGCTCGTTGCGCGCATTNGGGAGAGGATGACGAATCCTGCCATACAATCCACGCCAGGAAGCTCAGGGTATTTGGATTTGTATCCTGAACGCAAAATGTCATTTTTTAAGAATCCTTATATTCTCGGACTCGCTGCTGTCGCTGGCATTGGTGGCTTGCTTTTTGGCTACGACACAGGTGTGATATCAGGAGCCCTTCTATATATTAAAGATGATTTTGAGGCGGTTGGACAAAGTAATTTTCTACAGGAAACAATAGTGAGCATGGCAATTGCTGGGGCAATAGTAGGAGCAGCAGGAGGTGGTTGGGTAAATGATGCATTTGGAAGAAAGAAGGCCACTCTGATTGCTGATGTCATCTTCATTGCTGGGGCAATTGGCATGGCTGCCGCACCTGATCCTTATGTCCTCATATTGGGACGCTTTCTGGTAGGTTTGGGTGTGGGCATTGCTTCCGTGACCGCCCCTGTCTATATTGCAGAAGCATCCCCATCCGANATAAGGGGTTCTTTAGTCAGCACCAATTCCCTCATGATCACTGGTGGACAGTTCCTTTCCTACGTCGTTAACCTTGCTTTTACACGGGTCCCTGGGACATGGCGATGGATGTTGGGAGTTTCAGCTGTGCCAGCAATAGTTCAATTCATTCTCATGCTCTGCCTCCCCGAATCCCCAAGATGGCTCTTTATAAAGAATAGGAAAAATGAAGCTGTTGATGTGCTTTCTAAGATCTTTGACATGTCTCGCCTAGAGGACGAGGTTGATTTCATAACAGCTCAGTCAGAGCAAGACCGCCAAAAGAGGAAGAACGTCAAATACGGGGATGTTTTTAAATCCAAAGAAATCAGACTGGCTTTCCTTGTTGGNGCTGGAATGCAGGTATTCCAGCAGTTTACGGGCATAAACACAGTGATGTACTACAGCCCAACGATAGTCCAAATGGCGGGCTTCCACTCTAAAGAGTTGGCCCTTCAAATCTCCCTCATAGTTGCTGCCATGAATGCTGCAGGAACAGTGCTCGGCATTTACCTCATCGACCATGCGGGGCGGAAGAAACTGGCTCTTTGCAGCTTAGGAGGAGTGTTTGCATCGTTGGTCCTCTTGTCCTTGGCATTCTTAAACCAACACTCACACGCAAATGCCAATCGATGGTATGGGTGGCTTGCAGTTTTGGGTTTGATCCTATACATTGCGTTTTTCTCACCGGGGATGGGGCCTGTGCCATGGACTTTGAACTCGGAGATATATCCCGAAGAGTACAGAGGGATTTGTGGGGGAATGTCGGCTACTAATACAATTTGGTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00443	82903	100593	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000443s00016857.1	PF00083.19	Sugar_tr	14	412	5.10E-70
Glyur000443s00016857.1	PF00083.19	Sugar_tr	456	840	4.80E-104
Glyur000443s00016857.2	PF00083.19	Sugar_tr	39	427	2.10E-100
Glyur000443s00016857.3	PF00083.19	Sugar_tr	39	407	1.90E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.978
SRR1783600	control	3.034
SRR1783602	moderate drought stress	3.995
SRR1811619	moderate drought stress	3.911

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.403
DRR006520	Root Summer glycyrrhizin high producing strain	1.399
DRR006521	Root Winter glycyrrhizin high producing strain	1.006
DRR006522	Root Winter glycyrrhizin high producing strain	1.006
DRR006523	Root Summer glycyrrhizin low producing strain	0.755
DRR006524	Root Summer glycyrrhizin low producing strain	0.796
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.735

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.433
SRR2868004	Drought Stress (root)	21.300
SRR2967015	Control (root)	30.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.979
SRR9715740	Leaf	5.145
SRR9715741	Leaf	8.668
SRR9715739	Root	1.055
SRR9715742	Root	1.746
SRR9715743	Root	1.712

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.873
SRR8749028	MeJA induced 9h	5.225
SRR8749029	MeJA induced 9h	1.897
SRR8749030	Uninduced	3.279
SRR8749031	Uninduced	7.125
SRR8749032	Uninduced	4.388

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.154
SRR8400027	Control - Root	12.292