Gene detail

Gene detail information of Glyur000443s00016856.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60900.1	2.00E-144	receptor-like protein kinase 1
NR	XP_003555643.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Glycine max]
COG	YP_003372407.1	1.00E-23	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Swissprot	tr\|Q39202\|RLK1_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor)
trEMBL	tr\|K7N5H4\|K7N5H4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G39071.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000443s00016856.1
ATGAGTCTTGCTATTCTGGGTTGTCTTGCTCTTTTCCTTCTCCCCTACGTCTGTGCTCAGAAGAATGTTAGCCTCNGTGAGACACTTGTTGCAGGCAACGGTGATGCCCCATGGCTTTCTCCATCGGGAGAGTTTGCATTGGGGTTTCATCAACTTGAGGATGGCCTTTTCTTGCTGGCCATATGGTACCACAAAATACCTGACAGGACCATCATATGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGGTCAAAACTGGAGCTGAATGAGAACAGTGGACTTGTGCTGAGTAGCCCTCAAGGTGGTGTTGAGCTTTGGAGATCACAGCCCATATCAGGTACCGTTTCCTATGGACTAATGAATGATACAGGCAACTTTCAGCTGCTGGGTAAGAACTCGCAGGTGTTGTGGGACACTTTCAGAATCCCAACTGATACCTTGGTGCCAACTCAAATCATGGAGGTCNAAGGCACGCTCTCATCTCGATTCAGACAGACCAACTTCTCACTGGGAAAGTTCCAATTTCGCTTGCTTGAGGATGGCTTCTTGTACATACTCAGAAGGAGTGGCGAGAGGTTTCATATTACAGATCCCAACGATGTGCTCTCAACCTATTATTACAGAGCAACCATAAACTTTGATGGTGTTTTCACCATATCCCATCACCCGAAAAATCCAAGTGCAAATCAGAACTGGACGGCTGTGCAGACAATACCAGATAACATTTGCACGAAAATAGAAGAAGAAAAGGGTAGTGGGGTGTGCGGATTCAATAGTATCTGCACGCTCAAAACTGATCAAAGACCAATGTGCAGATGCCCAGAAGGGTATTCTCTTCTTGATTCAACTGATGAGAATTGCCCAACACTAACTTTCCTCGGTCGAGTTATGAATGGTATAATCCTTACGATTTGGAAGGCTGCAAGACTTCTTGCTTGCAAGATTGCTTCTGTGCTTTTAGCTTTTTTTCATATTGATTGCTGCTGGAAGAAGAAGCTGCCTCTCTCACATGGAAGAGAGGATCGTTCAACCGNGGGAACTGCTTTCCTTAAATTGAGGAAAAATAACGATTCGTCGGGAAGTCCTCGAAATCCACCATTCACAGAAGTGAAGAAATACAAAAAGGATCAAGACACTCTGATCACTGTGATATCAGTCCTTCTGGGAGGCTCTGTGTTTGTCAATCTCATGTTGGTCAGTGCAATATGCATTGGTTTCCTCTTCTGCTACAACAGAAACAAATCCACCAAGAAAATTGTTGCAGAGAGCAATTTGCGCAGTTTCACCTATGGAGAGCTTGTGCAAGCAACAAGTAACTTCAAAGAAGAACTGGGAAGGGGATCNTGCGGCGTCGTCTTTAAAGGAATCACAGATTTGGCAACTATTGCGGTGAAGAAATTGGACAAGGTGCTAAAAGACAGCGATAAGGAGTTCAAAACAGAAGTGAACGCAATAGGTCAAACTCATCATAAGAACCTAGTTCGCCTGCTNGGATACTGTGATGAGGNACAACACCGGATTTTGGTATATGAGTTCTTGAGCAGCGGTACTTTAGCAAGCTTCCTTTTTGGGGATTCCAAACCGAATTGGAANCGGAGAGTCCAGATTGCCTTTGGGATTGCAAGGGGGCTTGTTTACTTGCACGAGGAATGCNGCACCCAGATCATCCATTGTGACATAAAGCCACAAAACATACTCCTTGATGAGTATNTCAATGCAAGGATATCAGATTTTGGGCTAGCAAAGCTACTGATGATTAATCAAAGCCGCACAGAAACTGGTATTCGAGGGACAAAAGGGTATGTTGCCCCGGACTGGTTCAGGAGTGCACCAATCACTGTCAAGGTTGATGTTTACAGTTTTGGGGTGCTGCTGCTGGAGATCNTTTGCTGCAGAAGAAACGTAGATCGCGGCAATTTTGACGATGACGAGAAGGCCATTTTAACTGATTGGGCCTATGACTGCTACCGGGCTGGAAGAATTGACATCCTNGTTGATAATGATGATGAGGCCATCAATGACATGAAGAGGCTGGAAAGGTTTGTGATGGTAGCTATTTGGTGCCTTCAAGAAGATCCCTCTCTCAGGCCAACAATGAAGAAGGTTATGCTGATGCTGGAAGGAATAGCTCCAGTCACAGTTCCATCCAGTCCCTGCCCTTTTGCTTCTGTCTCTGTTAGTTGCAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00443	77704	80106	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000443s00016856.1	PF01453.19	B_lectin	69	156	4.20E-14
Glyur000443s00016856.1	PF00069.20	Pkinase	441	704	3.70E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.063
SRR1783600	control	0.017
SRR1783602	moderate drought stress	0.089
SRR1811619	moderate drought stress	0.123

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.381
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.335

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.113
SRR2868004	Drought Stress (root)	0.106
SRR2967015	Control (root)	0.239

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.169
SRR9715740	Leaf	8.477
SRR9715741	Leaf	8.992
SRR9715739	Root	0.124
SRR9715742	Root	0.426
SRR9715743	Root	0.505

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.384
SRR8749028	MeJA induced 9h	0.063
SRR8749029	MeJA induced 9h	0.373
SRR8749030	Uninduced	0.706
SRR8749031	Uninduced	0.035
SRR8749032	Uninduced	0.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.056
SRR8400027	Control - Root	0.096