Gene detail

Gene detail information of Glyur000443s00016852.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13030.1	0
NR	XP_004497400.1	0	PREDICTED: UPF0061 protein azo1574-like [Cicer arietinum]
COG	YP_006760668.1	3.00E-160	hypothetical protein TOL2_C18030 [Desulfobacula toluolica Tol2]
Swissprot	tr\|Q9FZ86\|PDCB3_ARATH	6.00E-21	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor)
trEMBL	tr\|V7B9R6\|V7B9R6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14617.1}

Sequence

Transcript Sequence

>Glyur000443s00016852.1
GTGTTTGGGTTGACCCGGAAGCAAGCACGAGGGGGGAATGTGGTGGGGATGATATTGATATTCATACATATTATAGAGAAAAGNGAAGAGAGAAGATGGTACTGCTGACGCAGACGCTCCCCACACTCTCCCATTTCTCTCCCAAAACCGTATTCTCAGTTTCACTTTCCTCCTCTCTCCGACGCGCCAGGAGGAATTTCCATTTCTGCCCTCGCATTGTTGCATGCCGAGCAATGGGTTCACCGGAGCAGCAGGGATTCTCGGCCTCGCTNGACTCTGTAACCCAAGACCTTCAGAATCACAACCTTCAAAGTCACAAGTTGAAGCTGGAAGATCTGAATTGGGACCATTCCTTTGTTAGAGAGTTGCCCCCTGATCCCAGAACCGATCCCCTTCCGCGAGAGGTGTTGCATGCTTGTTATACAAAAGTATCACCGTCTGCTGAAGTAGATGATCCCCAACTCGTGGCATGGTCCGAGCCAGTTGCTGACCTCCTTGATTTGGACCATGAAGAGTTTGAAAGGCCAGATTTCCCCCTTATCTTCTCTGGTGCATCACCCTTGGTTGGAGCGTTGCCTTATGCTCAGTGCTATGGTGGGCATCAATTCGGTATGTGGGCTGGGCAGTTGGGTGATGGTAGGGCAATTACGCTAGGGGAGATACTGAATTCAAAGTCTGAAAGGTGGGAACTGCAACTTAAAGGTGCTGGGAAGACTCCTTACAGTCGNTTTGCTGATGGCCTTGCAGTGCTACGTAGCAGCATCAGGGAGTTCCTTTGCAGTGAAGCAATGCACCACCTAGGGATACCAACGTCTCGTGCCCTTTGTCTTGTGACTACTGGGAAGCTGGTCACTCGAGACATGTTCTATGATGGCAATCCAAAAGAAGAACCTGGTGCAATTGTTTGCAGAGTTGCTCAATCCTTTTTGCGTTTTGGATCATACCAATTACATGCCTACAGAGGCAATGAGGACCTAGATCTTGTTCGTGATTTGGCAGACTATGCTATCAAGCACCACTTTCCTCATATTGAAAACATGAGTAAGAGCGAAAGCTTATCTTTCAGCACTGGTGATGAAGATCATTCTGTTGTGGATCTTACTTCAAACAAGTATGCAGCATGGGCAGTGGAGGTTGCTGAGCGTACTGCTTCCTTGATTGCTAGATGGCAGGGTGTTGGTTTCACTCATGGTGTGATGAACACGGATAACATGAGCATTTTGGGGCTAACCATTGATTATGGTCCATTTGGATTTTTGGATGCTTTTGATCCTAAATTTACCCCAAATACCACAGATCTTCCAGGTAGAAGATACTGTTTTGCAAACCAGCCTGACATTGGTTTATGGAATCTTGCACAGTTCACAACAACACTGTCAGCGGCTCATTTAATAAATGACAAGGAGGCTAACTATGCAATGGAAAGATATGGAACAAGATTTATGGATGATTATCAAGTTATAATGACCAAAAAGCTTGGTCTCCCTAAGTATAATAAGCAGCTGATTAATAAACTTCTTAGTAATATGGCTGTTGACAAAGTTGATTATACAAACTTCTTTCGCACGCTCTCAAATATTAAAGCAGACACAAGNGTTCCAGATGGTGAATTGTTAGTCCCACTAAAGTCAGTGCTGTTAGATATGGGTAAGGAGCGTAAAGAAGCATGGACGAGTTGGTTGAAAACCTATATACATGAGCTCTCTACCAGTGGCATTTCTGACGATGAGAGGANGACCTCGATGAATTTGGTAAATCCTAAATATATTCTCAGGAACTATCTTTGCCAGACTGCAATTGATGCTGCAGAAATTGGTGATTTTGGAGAAGTCCGTAGGTTGCTCAAATTAGTGGAACATCCTTTTGATGAGCAGCCAGGAATGGAAAAGTATGCTCGCTTGCCCCCAGCTTGGGCATATCGACCAGATGCAGATAGATCAATAAGACTATTGAAAGGCCCTAAACATAGAAGAAATATAATCAAGAAGAACCCAAAGAAGTTGAAAATGATTAAGCATTTTGATCTCAATCCATCCATATATTCATCAAATGCACAACCCTACAGTGTTAGNTCTCCATTTTCTTTGCCTCCTTATGAATCACTGACTCCAACTCCATTGCCAGAAAACAGCCCTCCCTATTGTGTGTACCCACCACCAAGTACCCCTTCTACCANTATTCCCACACCCACAGACTCTCAACTACCACCTCCTTACTATTACACCTCTCCACTTCTTCCAACCCAAAACCCACCTCCAACCCCAATAACCACAACACCAGGCCCACCAGAAAATTTACCCACACCAACACCTGAAATTGTTCCAAGCCCGCCCAGTGACATACCTGGCTCACCGGAGCCCGTACTCAATCCCCCCGTCATTTACCCAGGCCCACCCGAGTCATCAATGAGCCCACCTTACTTTGAGCCCGCCCCACCTTATTTTGAGCCCACACCACCGTTCATACCTTCCCCTACCGGCGGCACTTTCCCCGGCCCACCCAGTACTGTTCCATCCCCTGGGGGAGGCACTGTCCCCAGCCCAACCGTGTTTCAGCCACCCGTGGTCTACCCACCACCAAGTGTTCCACCGCCACCCAACACCGCCCCACAGGCCACCTTGTGGTGTGTGGCTAAGCCTTCAGTTCCAGACCCAATCGTTCAAGAGGCCATGAATTATGCTTGTTGGTCAGGAGCGGATTGCACTTCTATTCAGCCCAATGGGCCTTGCTATGAGCCCGACACTATATTTGCACATGCTTCATACGCCTTCAATAGTTNCTGGCAAAGGACTAAAGCTTCTGGTGGCACGTGCGAGTTTGGAGGGACAGCCATGTTGGTTGCAGTTGACCCGAGCTACGATGGATGCCACTTCATCTACAACTGATCAAGGGGTTTTTTTTTTCTTCCTCTTTTCTTTGTTTAGAACAAAGCCACTTTTGGAACCAACCAATATTTGAATAGTGAAGACNATCTTTCTTTCATAACCTCCCCCTTTTTCTTATGAAAAAAGTTGTGTATGTATGGCACAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00443	58932	66106	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000443s00016852.1	PF02696.9	UPF0061	150	590	9.90E-115
Glyur000443s00016852.1	PF07983.8	X8	842	913	7.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.525
SRR1783600	control	13.692
SRR1783602	moderate drought stress	15.118
SRR1811619	moderate drought stress	15.171

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.964
DRR006520	Root Summer glycyrrhizin high producing strain	19.043
DRR006521	Root Winter glycyrrhizin high producing strain	31.442
DRR006522	Root Winter glycyrrhizin high producing strain	31.290
DRR006523	Root Summer glycyrrhizin low producing strain	23.233
DRR006524	Root Summer glycyrrhizin low producing strain	22.542
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.559
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.618

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.864
SRR2868004	Drought Stress (root)	32.026
SRR2967015	Control (root)	33.795

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.451
SRR9715740	Leaf	47.149
SRR9715741	Leaf	40.463
SRR9715739	Root	7.706
SRR9715742	Root	16.618
SRR9715743	Root	14.704

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.160
SRR8749028	MeJA induced 9h	29.872
SRR8749029	MeJA induced 9h	22.892
SRR8749030	Uninduced	28.600
SRR8749031	Uninduced	17.675
SRR8749032	Uninduced	16.840

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.731
SRR8400027	Control - Root	29.384