Gene detail

Gene detail information of Glyur000443s00016849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19630.1	4.00E-80	alpha/beta-Hydrolases superfamily protein
NR	XP_006606589.1	3.11E-136	PREDICTED: uncharacterized protein LOC100812369 [Glycine max]
COG	YP_001423660.1	1.00E-13	alpha/beta hydrolase [Coxiella burnetii Dugway 5J108-111]
trEMBL	tr\|I1NJC6\|I1NJC6_SOYBN	1.00E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G39110.1}

Sequence

Transcript Sequence

>Glyur000443s00016849.1
TGAATGCGTTGAGTGGCCCAACCCATTGTCCAATCCAACCAACCAAAACAAGACGCATTAGTTATTCGCTGCATTGCGTTGCGTGTGCTTGCTTGTGACTTGTGAGTTGTTCCTGTTGGGGGTGGGTGGCGTGATGTCAAACTACACAGTGGAGTCGTTCACGGTGGAAAGCAGCAGCGACGGAGTGAAGCTCCACACAAGGGTGTNCAAGCCAGCATCAGCTGCAGAAGGAGAAGGAGAAGAGGCCAAAGATGGCAACAACTTGGGTATCGTTCTGGTNCACCCTTACTCCGTCTTGGGTGGCTCGCAGGGTCTCCTCAAAGGAATTGCTTCTGGGTTGGCTCTCCATGGCTACACCGCCGTCACCTTCGACATGAGGGGCGTTGGCAGGTCCACCGGCAGGCCCTCTCTCACCGGCTTTGCTGAAGTTAAGGATGTCGTTGCTGTCTGCAATTGGGTCTCTCACTCTCTCTCCCTTCCCAGGGTTTTGCTGGTTGGCTCTTCCGCAGGTGCACCTATAGCAGGGTCAGCTGTTGATCAGGTCGNACAAGTCATTGGCTATGTAAGCATAGGCTATCCATTCGGCATGACTGCCTCAATCCTTTTTGGACGACACAATAAAGCCATCCTACAGTCCCCAAAACCGAAACTCTTCATTATGGGAACACAGGATGGGTTCACCAGTGTAAAGCAGCTGAAAAACAAGCTTAATTCTGCGGCAGGACGCGTTGAAACACATCTAATCGATGGGGTAGGTCACTTCCAAATGGAAGGGCCTGGTTATGATGCTCAAATGGTGGATCTCATCATTAAATTTATTGCATCATTGTGAAGACAGAGAACTCATTTCTTGAGTGTGAATTGTCTCTGATATTGGGATTAGTTTGTGTACATAACCTGGCTTATTGAATCTGCAGATTAGACTGTTGATTTGTGTTACTCCTATATGCCACTTTGCAAAAGAAATCAGTTACTTACAGAGAGTAAGCATTTCTGCTGATTGTATAATGTGTGTGTCTGTGTGTGTGAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGGTGGATTACAATTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00443	46720	48551	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000443s00016849.1	PF12695.2	Abhydrolase_5	46	210	4.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.723
SRR1783600	control	19.046
SRR1783602	moderate drought stress	27.003
SRR1811619	moderate drought stress	27.122

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.444
DRR006520	Root Summer glycyrrhizin high producing strain	35.392
DRR006521	Root Winter glycyrrhizin high producing strain	32.666
DRR006522	Root Winter glycyrrhizin high producing strain	29.873
DRR006523	Root Summer glycyrrhizin low producing strain	44.173
DRR006524	Root Summer glycyrrhizin low producing strain	43.511
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.235
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.211

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	84.564
SRR2868004	Drought Stress (root)	72.519
SRR2967015	Control (root)	93.086

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.787
SRR9715740	Leaf	52.772
SRR9715741	Leaf	41.314
SRR9715739	Root	78.368
SRR9715742	Root	32.248
SRR9715743	Root	42.343

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.577
SRR8749028	MeJA induced 9h	29.290
SRR8749029	MeJA induced 9h	23.288
SRR8749030	Uninduced	13.856
SRR8749031	Uninduced	8.834
SRR8749032	Uninduced	12.877

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.831
SRR8400027	Control - Root	60.530