Gene detail information of Glyur000442s00028046 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45360.1 | 2.00E-58 | Protein of unknown function (DUF1442) |
| NR | XP_004513665.1 | 1.16E-115 | PREDICTED: uncharacterized protein LOC101493390 [Cicer arietinum] |
| trEMBL | tr|G7JEM0|G7JEM0_MEDTR | 1.00E-111 | DUF1442 family protein {ECO:0000313|EMBL:AES87322.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00442 | 152792 | 153936 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000442s00028046.1 | PF07279.6 | DUF1442 | 1 | 235 | 2.20E-81 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.518 |
| SRR1783600 | control | 0.496 |
| SRR1783602 | moderate drought stress | 0.246 |
| SRR1811619 | moderate drought stress | 0.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.498 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.602 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.592 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.509 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.523 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.448 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.391 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 52.430 |
| SRR2868004 | Drought Stress (root) | 54.724 |
| SRR2967015 | Control (root) | 69.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.038 |
| SRR9715740 | Leaf | 0.256 |
| SRR9715741 | Leaf | 0.274 |
| SRR9715739 | Root | 0.756 |
| SRR9715742 | Root | 0.430 |
| SRR9715743 | Root | 0.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.421 |
| SRR8749028 | MeJA induced 9h | 5.944 |
| SRR8749029 | MeJA induced 9h | 3.778 |
| SRR8749030 | Uninduced | 23.404 |
| SRR8749031 | Uninduced | 44.761 |
| SRR8749032 | Uninduced | 28.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.153 |
| SRR8400027 | Control - Root | 14.207 |