Gene detail information of Glyur000442s00028040 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45350.1 | 2.00E-170 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | KHN35639.1 | 0 | Pentatricopeptide repeat-containing protein, chloroplastic [Glycine soja] |
| Swissprot | tr|O22137|PP202_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g45350, chloroplastic (Precursor) |
| trEMBL | tr|V7CDA1|V7CDA1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27348.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00442 | 111959 | 113666 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000442s00028040.1 | PF01535.15 | PPR | 23 | 48 | 0.02 |
| Glyur000442s00028040.1 | PF01535.15 | PPR | 51 | 76 | 5.90E-06 |
| Glyur000442s00028040.1 | PF01535.15 | PPR | 84 | 114 | 0.063 |
| Glyur000442s00028040.1 | PF01535.15 | PPR | 117 | 145 | 9.30E-09 |
| Glyur000442s00028040.1 | PF01535.15 | PPR | 148 | 176 | 0.0051 |
| Glyur000442s00028040.1 | PF13041.1 | PPR_2 | 177 | 224 | 1.50E-08 |
| Glyur000442s00028040.1 | PF01535.15 | PPR | 255 | 279 | 0.0024 |
| Glyur000442s00028040.1 | PF01535.15 | PPR | 283 | 310 | 0.00014 |
| Glyur000442s00028040.1 | PF01535.15 | PPR | 355 | 378 | 0.0015 |
| Glyur000442s00028040.1 | PF13812.1 | PPR_3 | 419 | 450 | 0.31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.539 |
| SRR1783600 | control | 0.567 |
| SRR1783602 | moderate drought stress | 1.057 |
| SRR1811619 | moderate drought stress | 1.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.030 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.301 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.116 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.336 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.290 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.152 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.827 |
| SRR2868004 | Drought Stress (root) | 4.074 |
| SRR2967015 | Control (root) | 5.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.227 |
| SRR9715740 | Leaf | 20.716 |
| SRR9715741 | Leaf | 9.939 |
| SRR9715739 | Root | 0.980 |
| SRR9715742 | Root | 1.030 |
| SRR9715743 | Root | 1.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.307 |
| SRR8749028 | MeJA induced 9h | 3.876 |
| SRR8749029 | MeJA induced 9h | 3.503 |
| SRR8749030 | Uninduced | 0.389 |
| SRR8749031 | Uninduced | 0.666 |
| SRR8749032 | Uninduced | 0.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.874 |
| SRR8400027 | Control - Root | 2.143 |