Gene detail information of Glyur000442s00028039 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00100.1 | 2.00E-79 | ribosomal protein S13A |
| NR | XP_010053902.1 | 2.76E-104 | PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis] |
| COG | YP_183664.1 | 4.00E-45 | 30S ribosomal protein S15 [Thermococcus kodakarensis KOD1] |
| Swissprot | tr|P62302|RS13_SOYBN | 2.00E-106 | 40S ribosomal protein S13 |
| trEMBL | tr|A0A059CJ48|A0A059CJ48_EUCGR | 1.00E-104 | Uncharacterized protein {ECO:0000313|EMBL:KCW78279.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00442 | 107981 | 110280 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000442s00028039.1 | PF08069.7 | Ribosomal_S13_N | 1 | 60 | 3.60E-32 |
| Glyur000442s00028039.1 | PF00312.17 | Ribosomal_S15 | 66 | 148 | 2.70E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.012 |
| SRR1783600 | control | 55.625 |
| SRR1783602 | moderate drought stress | 39.199 |
| SRR1811619 | moderate drought stress | 38.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 116.672 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 115.480 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 97.047 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 95.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 98.724 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 99.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.174 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 278.172 |
| SRR2868004 | Drought Stress (root) | 173.265 |
| SRR2967015 | Control (root) | 155.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 107.979 |
| SRR9715740 | Leaf | 103.426 |
| SRR9715741 | Leaf | 88.785 |
| SRR9715739 | Root | 130.335 |
| SRR9715742 | Root | 110.223 |
| SRR9715743 | Root | 118.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 443.571 |
| SRR8749028 | MeJA induced 9h | 141.629 |
| SRR8749029 | MeJA induced 9h | 307.841 |
| SRR8749030 | Uninduced | 59.518 |
| SRR8749031 | Uninduced | 38.766 |
| SRR8749032 | Uninduced | 78.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 187.432 |
| SRR8400027 | Control - Root | 159.134 |