Gene detail

Gene detail information of Glyur000441s00028792

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51350.1	0	Leucine-rich repeat transmembrane protein kinase family protein
NR	XP_003546623.1	0	PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Glycine max]
COG	YP_001192956.1	3.00E-50	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9FII5\|TDR_ARATH	0	Leucine-rich repeat receptor-like protein kinase TDR (Precursor)
trEMBL	tr\|I1MI35\|I1MI35_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G26330.1}

Sequence

Transcript Sequence

>Glyur000441s00028792.1
CAATATTAGCATTTTTTTTTTATAATACTGACACACACCATTGCCTTTGCTTGGGGTAGTTACAATTGTCCCTCTCCCTCTCCCTTGTGCTCTTCAAGTTCCAATGGAGATTTTCAAATGCTTGTACTTCTTCAATCTTCTAGCTACTACTTTCATGTTGTTATCGGCAGTTTTAGCAATAGACCCTTACTCAGAGGCNCTCCTGAGCCTTAAATCTGAGCTTGTAGATGTTGATAACAGCTTGCATGACTGGGTTGTGCCCTCTGGAATGAACAANTTAACTGGGAAGTCCTATGCATGTTCTTGGTCAGGTATCAGGTGTAACAAGGACTCAATTGTAATTTCCATAGACCTGTCCATGAAGAAACTTGGAGGTGTAATATCAGGGAAGCAATTCAGTGTCTTCACAAAGCTTTCTGATCTCAACCTGAGCCACAACTTCTTCTCTGGGCAGCTTCCACCAGAGATTTTCAACCTCACAAGCCTGCAAATCTTGGATATCAGAAGAAACAACTTTTCTGGTCACTTCCCAGTGGGAATTCNCAGGCTCCAAAACTTGGTTGTGCTTGATGCCTTCAGCAACAGCTTCTCAGGGCCATTGCCTGCTGAATTCTCAAAGATGGAACATCTCAAGGTTCTTAATCTAGCTGGGAGTTACTTCAGAGGACCAATACCATCTGAATATGGTTCTTTCAGAAGCCTTGAGTTTCTTCACCTTGCAGGGAATTCTCTCACAGGAAGTATACCTGCAGAACTGGGTAACCTCCAAACAGTGACCCACATGGAGATTGGCTACAACTTCTACCAGGGTTTTATTCCACCCCAACTTGGTAACATGAGCCAGCTTCAGTATCTTGACATAGCAGGTGCAAATCTATCAGGTCCTATCCCAAAGGAGCTCTCCAATCTTTCCACTTTGCAAACACTTTTCCTGTTCAGAAACCAACTCACAGGACCAATACCAAGTGAGTTCAGCAGAATCAAGCCTCTCACGGATTTGGATCTCTCTGATAACTTCCTTTCAGGGTCAATTCCTGAAAGCTTCTCAGAGCTGAAGAACCTTAGACTGCTCAGTCTCATGTACAATGACATGAGTGGCACTGTCCCTGAAGGCATTGCACAGCTACCATCCTTGGAAACTCTTCTGATTTGGAACAATCGCTTCTCTGGAACACTCCCACAGGACTTAGGAAGGAACTCCAAACTCAAGTGGGTGGATGTCTCCACAAACAACTTCATTGGAAGCATACCACCAGACATTTGTGTGAGTAGAGTACTATTTAAGCTAATCCTGTTTTCAAACAAATTCACAGGTAGCCTTTCATCAATCTCCAACTGTTCTTCCCTCGTTCGTCTTCGCCTAGAAGATAACTCTTTCTCAGGAGANATCCCTTTGAAATTCAGCCATCTTCCTGACATCTCATATGTTGATCTGTCAAGGAACAATTTTGTTGGTGGGATTCCCTCAGATATTTCTCAAGCTACTCAACTGGAGTATTTCAATGTCTCTTATAATCTACAATTAGGAGGCACCATCCCTGCACAAATGTGGTCTTTGCCCCAACTTCAAAACTTTTCAGCATCTTCTTGTGGTATTTTGGGCAATCTTCCCCCATTTGAGTCCTGCAAATCAATTTCAGTTATTGATCTTGGTGGGAACAACATATCTGGAATCATCCCAAACAGTGTTTCCAAATGTCAAGCTCTTGAGAAAATCGAACTATCCGATAACAATCTGACAGGTCAGATACCTGAGGAGCTTGCCAGTATCCCTCTCCTTGGAGTTGTAGATTTATCCAACAACAAGTTCAATGGCCTTATACCTGCAAAGTTTGGCAGTTCATCAAGTTTACAACTTCTCAATGTGTCTTTCAACAACATATCAGGTTCAATTCCCAAAGGTGGGTCATTCAGATTAATGGGTAGCAGTGCATTTGTTGGGAATTCAGAGCTATGTGGAGCACCTCTAAGACCATGTCCTGAATCAGTTGGAATTTTGGGCAGCAAAGGCACATGGAAGCTCACACATATTCTGTTACTTTCTGTAGGGTTGCTCATAACCCTTATAGGATTGGCTTTTGGGATACTTTATTTCAGAAGGGGACTTAAAAATCAATGGAAGATGGTTCCATTTGTTGGACTCCCTCAATTCACAGCAAATGATGTCTTGACAAGCTTCAATGCCACTGAACATACAGCAGAAGTTCCATCACCATCACCTGTAGTTGCAAAAGCAGTTCTGCCTACGGGTATAACAGTTTTAGTCAAAAAGATTGAATGGGAAGCAAGGTACATTAAGTTGGTGTCAGAATTTATAATGCAACTAGGAAATGCAAGGCACAAAAATTTAATCAGACTGTTGGGGTTTTGCCACAACCAGCACTTGGTCTACCTTTTGTATGATTGCTTGCCCAATGGGAATTTGGCTGAGAAAATTGGAATGAAGTGGGATTGGGCTGCTAAATTCAGAACAGTGCTTGGAATTGCAAGGGGACTTTGCTTCCTTCACCATGACTGTNACCCAGCTATACCCCATGGAGAGTTGAAGTCCAGCAATGTTGTGTTTGATGAAAATATGGAACCCCATTTGGCAGAATTTGGGTTCAAACATATGTTAAAGTTGAGCAAAGGCTCATCTCCAACTACAAGTACAACTAAGCAAGAAACAGAATACAATGAAGCAATGAAAGAGGAACTCTGCCTGGATGTCTACAATTTTGGTGAGATGATTCTGGAAATTTTAACCAGCGGAAGGTTGACAAGTGCAGCAGCTAGCATAAACGGCAAATCACGGGAGGTTCTGCTTAGAGAGATTTACAATGATAATGAAGTGAGTTCTGCAGGTTCATTGCAAGAGATTAAACTGGCTCTTGAGGTTGCTATGCTTTGCACTAGAAGCACGCCATCGGATCGGCCATCCATGGAAGATGCTCTGAAGCTTTTGTCAGGGTTAAAGCCTCTAGTAGAAGATGGCAGAACTTCAAAAGAAGGGAAATAATAAAAATAAAAATTTCATTTGCATCATCAGCATCAACGTTTTGAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00441	100887	104456	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000441s00028792.1	PF08263.7	LRRNT_2	31	74	5.40E-05
Glyur000441s00028792.1	PF00560.28	LRR_1	127	147	0.49
Glyur000441s00028792.1	PF00560.28	LRR_1	199	221	0.13
Glyur000441s00028792.1	PF13855.1	LRR_8	296	354	1.80E-08
Glyur000441s00028792.1	PF13855.1	LRR_8	488	545	1.20E-07
Glyur000441s00028792.1	PF00069.20	Pkinase	716	945	2.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.088
SRR1783600	control	5.085
SRR1783602	moderate drought stress	7.747
SRR1811619	moderate drought stress	7.726

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.196
DRR006520	Root Summer glycyrrhizin high producing strain	16.014
DRR006521	Root Winter glycyrrhizin high producing strain	0.633
DRR006522	Root Winter glycyrrhizin high producing strain	0.643
DRR006523	Root Summer glycyrrhizin low producing strain	8.199
DRR006524	Root Summer glycyrrhizin low producing strain	8.223
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.273
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.246

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.187
SRR2868004	Drought Stress (root)	11.487
SRR2967015	Control (root)	16.072

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.553
SRR9715740	Leaf	1.119
SRR9715741	Leaf	1.263
SRR9715739	Root	1.163
SRR9715742	Root	7.117
SRR9715743	Root	6.231

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.472
SRR8749028	MeJA induced 9h	0.564
SRR8749029	MeJA induced 9h	0.221
SRR8749030	Uninduced	0.416
SRR8749031	Uninduced	0.353
SRR8749032	Uninduced	0.606

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.134
SRR8400027	Control - Root	18.864