Gene detail

Gene detail information of Glyur000440s00021881

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56190.1	6.00E-73	alpha-soluble NSF attachment protein 2
NR	XP_007141718.1	1.11E-152	hypothetical protein PHAVU_008G219300g [Phaseolus vulgaris]
Swissprot	tr\|Q9M5P8\|SNAA_SOLTU	2.00E-122	Alpha-soluble NSF attachment protein
trEMBL	tr\|I1M7N8\|I1M7N8_SOYBN	1.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G05920.1}

Sequence

Transcript Sequence

>Glyur000440s00021881.1
CTCAGTTTCATTGAGCGTTTGGACCAAAAAAAATAATGTTTCATTGAGCGTGAAAGAGAAACCAAATTTTCCGTTTTGTTTCTGTTGCGCCCTGTGTTTTCTGTTCTTCCGGTTTGGTGGTGAATACTATCTATCTCTAACCATCTCTCTCTGTGTAAAATATCAATCATTCAATCAATCTAGTTTGCATGAAAGAGAGGGAAATTGAATTGATCGATTCCATTTGTTGAGAAAAAAAACATGGGAGATCAATTGGCGAGAGCGGAGGATTTCGAGAGCAAGGCAGAGAAGAAGCTGAGTGGTTGGGGTTTGTTTGGATCCAAATATGAAGACGCTGCTGATCTCTTCGATAAATCCGCCAATTCCTACAAGCTCGCCAAATCATGGGACAAAGCAGGATNCACCTACATCAAGTTGGCAAATTGCCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCCAAGCNTATGTTGATGCTGCACATTGCTATAAGAAAACCAATATAACTGAGACCGTATCTTGCTTAGACCATGCTGTAAATATTTTCTGTGAAATTGGAAGAATTTCTATGGCTGCTAGATATTTGAAGAGGTCAATTGAAATTTATGAAGAGATAGCTCGCCAGTCTCTCAGCAATAATTTGCTAAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGTCAACTTTGTAAAGGGGATGTTATTGCTATTACCAATGCATTAGAGAGATATCAGGAATTGGATCCAACATTTTCAGGAACGCGTGAATATAGACTTTTGGCAGATGTTGCTGCTGCAATTGATGAAGAAGATGTTGGAAAGTTTACTGAAGTTATCAAGGAATTTGATAGCATGACTCCTCTGGATTCTTGGAAGACAACACTTCTTCTGAGGGTGAAGGAAAAACTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGAATTGCCACCTAGTCTTCTTTCTGTTGGACTTCATGTTTGATGATTTGTCTTGTATTATGCTTGTCTGTGTAGTTGTTCATCTTACATATTACTATAATATAAAGTGTACTTGCTTTGGGTTTTGATTGGAGTCAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00440	161740	166078	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

--

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000440s00021881.1	PF14938.1	SNAP	116	225	1.50E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.794
SRR1783600	control	5.609
SRR1783602	moderate drought stress	4.225
SRR1811619	moderate drought stress	3.783

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.125
DRR006520	Root Summer glycyrrhizin high producing strain	12.458
DRR006521	Root Winter glycyrrhizin high producing strain	14.151
DRR006522	Root Winter glycyrrhizin high producing strain	13.302
DRR006523	Root Summer glycyrrhizin low producing strain	9.979
DRR006524	Root Summer glycyrrhizin low producing strain	9.814
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.778
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.955

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.652
SRR2868004	Drought Stress (root)	24.309
SRR2967015	Control (root)	28.200

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.766
SRR9715740	Leaf	14.718
SRR9715741	Leaf	17.143
SRR9715739	Root	3.405
SRR9715742	Root	8.925
SRR9715743	Root	6.912

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.357
SRR8749028	MeJA induced 9h	9.257
SRR8749029	MeJA induced 9h	8.681
SRR8749030	Uninduced	6.822
SRR8749031	Uninduced	7.004
SRR8749032	Uninduced	7.268

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.687
SRR8400027	Control - Root	23.782