Gene detail

Gene detail information of Glyur000440s00021879

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40410.2	4.00E-141	Staphylococcal nuclease homologue
NR	AFK42528.1	0	unknown [Lotus japonicus]
COG	YP_003662454.1	8.00E-25	SNase-like nuclease [Xenorhabdus nematophila ATCC 19061]
Swissprot	tr\|F4IH31\|CAN2_ARATH	1.00E-176	Staphylococcal-like nuclease CAN2
trEMBL	tr\|I3SQI6\|I3SQI6_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK42528.1}

Sequence

Transcript Sequence

>Glyur000440s00021879.1
GTTTTGTTGGTGTTGCTTCGTGTTCTTTGTTGACGCGCAAAAGAGTTACCCACAATTTACGTTAAGCCGTTGACGAAGATCTGTCGCAGTTTCAACTTTCACCCCTCAATAAAATTATTCGCATAAATAAAAGTTAGTTTCTGCACGGTAAAACCCGGGACAGCCAATAAAAACTTGCCACCTGTCATTCTGGATTTTTATACTTCTTGGGTAAATTTCCCNCTCCACGCGATCCCAATACAATCCNAGATTGGTTGCCACTCCTAGATTTTCTGATTCTCCCTCTTTGATTTCTCTCTCCTTTCCTCCAAAGTTTGAACCTTTTTGCCACAATTCACAACCATGGGAAACGCCCTCAGATTCCTCTACAGCCATTGCTTGAAGCCCACAGCAGCTGGTGATTATGAATCATCACTTGGACCACACGGTGTGTCCTCTTCCACCGTAGGTGTTTCAGCACTTGCCCATGACCTCTTTCACTTTGAAATCACCTCCCAGGTCCCTGAAGGACTGAGCACACATGNTGTGTCTTCTAAGAAGGCTCAAGCTAACTGGTATAGAAAGTTAATAGATGCTTGGAAAGAAGCAAAGCCCCCTCCTAGAACGCCTGAAGAAGCAGCTAGACTTATCATTCAGACCTTGAAAAGACATCAGAAAGCAGATGTTCAGGGATTGTTGACTTTCTATGGTCTTCCTCTGCCACACACCCTAGTTGAAGTAGCTGTTCAACCCCCTACATCCTTGCCCAATGGGGTGCAATATGAAATGCACACCTTGCCAGTTGATGCAAAAGCAGTGGCAGATGGTGATACTATAACAGTGTATGTTAGCACAGCAGATCCCAGGGAATCATCATTTGTCCCTAACAACGTGNATGCAGCAGCCGTGCAAAGATCAGATGCCCGTGCCCGAAGGAACTATGCAGAGGCAGATGCACTTCACAAACAGATTACTGATTCAGGATACCGGGTGATTCCTTTTCAAAATGAGGAAATCCTAGCTAGAAAGTATAGGATCCGACTAAGGGGAATTGATGCACCAGAAAGTAAAATGCCATACGGAAAAGAAGCTAAAACGGAACTGACCAATATCGTTCAAGGAAAGTCTTTGAGGGTCCTTGTTTATGGAGAAGATCGCTATGGTCGTTCTGTAGCTGATATCTATTGTAATGGCATTTTTGTACAGGAAATGATGCTAAAGAAGGGTTTAGCATGGCACTACTCAGCCTATGACAAACGACCAGAACTGGAATCATGGGAAAAACAAGCCAGAGCAAAGCGAGTTGGACTATGGGCTGCAAAACATCCTGAACAGCCATGGGAATGGAGGAAGGACAGGAGAGAAGCTAATTAGCATTGCCTAAAATCACCCCAGCTGAATTACCAGAGTGCCAAATGAAAATTAAGCTTAATCAGTAAATTCTATGGGAAGCCTCAAATAAAAGGTCCTTCATTCAATGTTAATGTATCATTGTTGTAACCAACTACATGTATATTAAGCATCTGTGAGCTTATTAGATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00440	150213	153078	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004518 nuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000440s00021879.1	PF00565.12	SNase	224	318	6.10E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.713
SRR1783600	control	38.572
SRR1783602	moderate drought stress	23.437
SRR1811619	moderate drought stress	23.277

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.413
DRR006520	Root Summer glycyrrhizin high producing strain	16.726
DRR006521	Root Winter glycyrrhizin high producing strain	16.314
DRR006522	Root Winter glycyrrhizin high producing strain	15.778
DRR006523	Root Summer glycyrrhizin low producing strain	22.178
DRR006524	Root Summer glycyrrhizin low producing strain	22.960
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.724
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.166

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.729
SRR2868004	Drought Stress (root)	34.204
SRR2967015	Control (root)	27.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.403
SRR9715740	Leaf	38.846
SRR9715741	Leaf	42.019
SRR9715739	Root	3.936
SRR9715742	Root	11.076
SRR9715743	Root	10.142

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.986
SRR8749028	MeJA induced 9h	73.017
SRR8749029	MeJA induced 9h	95.920
SRR8749030	Uninduced	45.623
SRR8749031	Uninduced	85.310
SRR8749032	Uninduced	49.445

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.717
SRR8400027	Control - Root	18.753