Gene detail information of Glyur000440s00021877 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05365.1 | 3.00E-13 | Heavy metal transport/detoxification superfamily protein |
| NR | CDP13951.1 | 4.59E-31 | unnamed protein product [Coffea canephora] |
| Swissprot | tr|O82089|CCH_ARATH | 2.00E-10 | Copper transport protein CCH |
| trEMBL | tr|A0A068UZU9|A0A068UZU9_COFCA | 2.00E-31 | Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313|EMBL:CDP13951.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00440 | 147670 | 149357 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000440s00021877.1 | PF00403.21 | HMA | 7 | 61 | 2.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.600 |
| SRR1783600 | control | 10.728 |
| SRR1783602 | moderate drought stress | 4.992 |
| SRR1811619 | moderate drought stress | 5.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.320 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.327 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.084 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.655 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.582 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.151 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.414 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.254 |
| SRR2868004 | Drought Stress (root) | 1.983 |
| SRR2967015 | Control (root) | 1.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.810 |
| SRR9715740 | Leaf | 35.450 |
| SRR9715741 | Leaf | 43.737 |
| SRR9715739 | Root | 2.308 |
| SRR9715742 | Root | 10.558 |
| SRR9715743 | Root | 10.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.057 |
| SRR8749029 | MeJA induced 9h | 0.283 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.266 |
| SRR8749032 | Uninduced | 0.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.945 |
| SRR8400027 | Control - Root | 3.212 |