Gene detail

Gene detail information of Glyur000440s00021875.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G34930.1	8.00E-85	arogenate dehydrogenase
NR	XP_004490996.1	6.87E-163	PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Cicer arietinum]
COG	YP_005063728.1	1.00E-36	prephenate dehydrogenase [Sphaerochaeta pleomorpha str. Grapes]
Swissprot	tr\|Q944B6\|TYRA1_ARATH	3.00E-101	Arogenate dehydrogenase 1, chloroplastic (Precursor)
trEMBL	tr\|I1M7P5\|I1M7P5_SOYBN	3.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G05990.1}

Sequence

Transcript Sequence

>Glyur000440s00021875.1
AAAATAGTCTCTTTATGTTACGACCAAAAAAATGTTGGGACGAAATAAGACCAAACAGTAGATTACTGCTCTGATTCCCAGTTCCTTCCCTACCTCCCTCCATTCGCCGCCGAAAGTTAGTTAGAGTGATCCTTTCATTCATACACTGTTTTTTCCTTTTTTCCCTCTTTCTTTTGCCAATCATGTCAGCTTCACCATCATCTTCTTCTTCTTCTTCAACTCTGAAAATTGGCATTGTTGGGTTTGGTTCCTTTGGCCAATTTCTGGCGAAGACTATGATCAAACAAGGCCACACTCTTCGTGCAACTTCTCGAACCGATTACTCCCACTTATGCCTCCAANTGGGCATCCGATTCTTCAGGGNTGTTATTGCATTCGTTGAGGCTGACAACGATGTCATACTGATATGCACATCCATTCTGTCCCTTTCGGAGGTTCTGAGGTCTATGCCACTCTCTCGTCTCAAGCGANCGACACTCTTTGTTGATGTCCTTTCCGTCAAAGAGCACCCAAGAGACCTTCTACTTCGGGTACTGCCAGAGGACTCAGACATACTCTGCACACACCCAATGTTTGGGCCAGANAGTGGGAAGGATGGGTGGAAAGATCTAACTTTCGTGTATGATAAAGTTCGAATACGAGATGAAGCTATCTGCTCTAATTTCCTCCATATTTTTGCAAGTGAGGGTTGTAGGATGCTTCAAATGTCCTGTGAGGAACATGATAAAGTAGCTGCCAAGAGCCAATTTATCACACACACTATAGGCAGGACATTGGAAGAAATGAATATTGAGTCCACACCCATCGATACAAAGGGCTTTCAGACACTTGTTCAATTGAAGGACACAACCATGAGAGATAGTTTTGATCTGTATAGTGGATTATTTATACATAACAGATTCGCTAAACAAGAGCTGGAAAACCTTGAACACGCCTTGCACAATGTCAAAGAGATGCTGGTTCAAAAGATGAATGAAGATGGGTCCAGAAAAGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00440	140171	142888	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15227	TYRAAT	EC:1.3.1.78	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0006571 tyrosine biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004665 prephenate dehydrogenase (NADP+) activity

GO:0008977 prephenate dehydrogenase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000440s00021875.1	PF02153.12	PDH	69	265	1.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.292
SRR1783600	control	0.291
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.334
DRR006522	Root Winter glycyrrhizin high producing strain	0.326
DRR006523	Root Summer glycyrrhizin low producing strain	0.220
DRR006524	Root Summer glycyrrhizin low producing strain	0.221
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.627
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.684

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.174
SRR2868004	Drought Stress (root)	0.224
SRR2967015	Control (root)	0.561

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.509
SRR9715740	Leaf	22.290
SRR9715741	Leaf	12.002
SRR9715739	Root	0.148
SRR9715742	Root	0.274
SRR9715743	Root	0.240

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.928
SRR8749028	MeJA induced 9h	15.862
SRR8749029	MeJA induced 9h	9.864
SRR8749030	Uninduced	0.794
SRR8749031	Uninduced	0.633
SRR8749032	Uninduced	1.438

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.480
SRR8400027	Control - Root	0.832