Gene detail

Gene detail information of Glyur000440s00021874

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56130.1	2.00E-61	biotin/lipoyl attachment domain-containing protein
NR	XP_003616717.1	7.26E-136	Biotin carboxyl carrier protein of acetyl-CoA carboxylase [Medicago truncatula]
COG	YP_007093241.1	3.00E-10	biotin carboxyl carrier protein [Chroococcidiopsis thermalis PCC 7203]
trEMBL	tr\|G7K795\|G7K795_MEDTR	3.00E-136	Biotin/lipoyl attachment domain protein {ECO:0000313\|EMBL:AES99675.1}

Sequence

Transcript Sequence

>Glyur000440s00021874.1
AACCCGGTGCATGTTAGCGAGAAGAAGCCACGGAAGCAGACCGAAGAAAGCGAAGAGNGAAGGCGAACATTTCGAAGCATTGCAAGTTGCAACAGCGTCAACACTATAATAAGTTGCTCACGCTTTTCCCATTCTCTGCAAATTCCCATTCGTTCCATGGATTCCTCCGCCGTCATTCGATCTTCTCACTATCCCACACGCTTTATGTCCCATATGCAATCCTCACTTCAGAAACCAGGTGTAATTTCCATCCAAAATGTTGGATGGAANTCTCAAAGTACGATTTTCTTCCAGAGCTTGGCAATTAGTGATAAGCACATTAATCCTCACAACAAATGGAATCGATCACTAGTATCATGTGCAAAAACAGCAGAAGCTATTGACACTACCAAGCCTGAGGGTGGGTTGTTTTGTTTTCTAGCTTCTATGGATAGCTTTCCAAAAGAATCCTTGAAGAAAAAACCTTTGCAAACTGCTACATTTCCTAATGGATTTGAGGCTTTGCTATTGGAGGTATGTGATGAGACTCAAATCGCTGAACTGAAAGTAAAGGTTGGAGAGTTTGAGATGAATATGAAGCGAAACATAGGAGCAACAAAAGCTCTGATGTCCAACATTTCACCAACTACACCACTACCTATTCCGACTAAACCTATGGTTGAATCTGCACCTTCTACCCTACCACCATCACCATCAAAATCATCTCCAGAAAAGACCAATCCATTTGTAAATGTTTCCCATGACAAGTCACCAAAGTTGGCAGCATTGGAGGCTTTTGGTACCAAAAATTATGTCTTGGTATCATCTCCTACGGTTGGTTCATTCAGAAGAGGTAGAACAGTGAAAGGGAAGAAGCAACCTCCTATCTGTAAAGAGGGTGATGTAATCAAGGAAGGGCAAGTTATAGGGTATTTGGATCAGTTTGGCACTTCACTTCCTGTTAAGTCAGATGTGGCCGGAGAAGTGTTGAAGCTACTCTTTCAGGATGGAGAGGCTGTTGGTTATGGAGACCCTCTTATTGCTGTCTTACCATCTTTCCATAATATCAAGTGAGCTAGCCTGTCCTATTGTTGATACTCATCTGGCATTAATTTGTTCGGNAGCTGAGATGCAAATTCATTTTACGGCCCAGTTATTCTTTGTATTTTGCAGCAAATAGTTTATAGGCAGGTTCACGAAAAGTTTTAGCAATAGATTCAGAAACATTGATTTGTGCTTTTTATATTGGGCAAGGGGTCCCTTCTTGAAGACCATATTTGGTATACTAGTTGCATGAAATTGTATTGGATTAGCTATTTCAAGTTTATTATTATTTATTGGAGAAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00440	131788	137604	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000440s00021874.1	PF00364.17	Biotin_lipoyl	269	341	5.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.649
SRR1783600	control	14.681
SRR1783602	moderate drought stress	8.384
SRR1811619	moderate drought stress	8.572

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.879
DRR006520	Root Summer glycyrrhizin high producing strain	5.886
DRR006521	Root Winter glycyrrhizin high producing strain	1.657
DRR006522	Root Winter glycyrrhizin high producing strain	1.595
DRR006523	Root Summer glycyrrhizin low producing strain	10.109
DRR006524	Root Summer glycyrrhizin low producing strain	10.208
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.601
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.601

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.600
SRR2868004	Drought Stress (root)	11.436
SRR2967015	Control (root)	11.660

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.983
SRR9715740	Leaf	5.637
SRR9715741	Leaf	7.107
SRR9715739	Root	4.651
SRR9715742	Root	8.806
SRR9715743	Root	6.546

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.505
SRR8749028	MeJA induced 9h	17.959
SRR8749029	MeJA induced 9h	28.221
SRR8749030	Uninduced	10.035
SRR8749031	Uninduced	6.828
SRR8749032	Uninduced	6.421

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.326
SRR8400027	Control - Root	22.762