Gene detail information of Glyur000440s00021867 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40370.1 | 0 | laccase 5 |
| NR | XP_003544045.1 | 0 | PREDICTED: laccase-5-like [Glycine max] |
| COG | YP_003996662.1 | 1.00E-32 | multicopper oxidase type 3 [Leadbetterella byssophila DSM 17132] |
| Swissprot | tr|Q9SIY8|LAC5_ARATH | 0 | Laccase-5 (Precursor) |
| trEMBL | tr|I1M7Q3|I1M7Q3_SOYBN | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00440 | 102648 | 106275 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000440s00021867.1 | PF07732.10 | Cu-oxidase_3 | 42 | 156 | 4.30E-46 |
| Glyur000440s00021867.1 | PF00394.17 | Cu-oxidase | 216 | 289 | 1.40E-19 |
| Glyur000440s00021867.1 | PF07731.9 | Cu-oxidase_2 | 403 | 533 | 2.50E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.929 |
| SRR1783600 | control | 24.745 |
| SRR1783602 | moderate drought stress | 16.568 |
| SRR1811619 | moderate drought stress | 16.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.293 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.364 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.854 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.845 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.270 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.553 |
| SRR2868004 | Drought Stress (root) | 34.954 |
| SRR2967015 | Control (root) | 30.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.588 |
| SRR9715740 | Leaf | 3.750 |
| SRR9715741 | Leaf | 3.645 |
| SRR9715739 | Root | 64.329 |
| SRR9715742 | Root | 23.796 |
| SRR9715743 | Root | 32.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.209 |
| SRR8749028 | MeJA induced 9h | 0.750 |
| SRR8749029 | MeJA induced 9h | 0.764 |
| SRR8749030 | Uninduced | 2.120 |
| SRR8749031 | Uninduced | 9.923 |
| SRR8749032 | Uninduced | 0.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 95.409 |
| SRR8400027 | Control - Root | 97.461 |